Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02925 and BL05282

See Amino acid alignment / Visit BSNT_02925 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:37
# Commandline: needle
#    -asequence dna-align/BSNT_02925.1.5803.seq
#    -bsequence dna-align/BL05282.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02925-BL05282.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02925-BL05282.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02925
# 2: BL05282
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 432
# Identity:     233/432 (53.9%)
# Similarity:   233/432 (53.9%)
# Gaps:         123/432 (28.5%)
# Score: 486.0
# 
#
#=======================================

BSNT_02925         1 TTGTATAGAAAC-ATCGTATTTTATCTCATTTT----ACTTTGTCTATTT     45
                     |||..|| |||| ||||.||||||| ..|||||    | |.|||.|.|||
BL05282            1 TTGCTTA-AAACAATCGGATTTTAT-GGATTTTTGGCA-TCTGTATGTTT     47

BSNT_02925        46 ATATC-AGTTGTCATGAAAAGCTTTGAGGT---GATAA---GCACAATAG     88
                     |.||| ..||.||      ||.||||.|.|   |||||   ||||   ||
BL05282           48 AAATCTTTTTCTC------AGGTTTGGGCTCAAGATAAACGGCAC---AG     88

BSNT_02925        89 CCAATGTTAT------------CTGCTTTGTTTTCGTATTGCTGTA----    122
                     |.||||.|||            ||.|.|.||.|||||..||.||||    
BL05282           89 CGAATGATATCATCTCAACGGCCTCCCTCGTATTCGTGCTGGTGTACGTA    138

BSNT_02925       123 ---------TTTTAAAGATGAAATGAAAACATACTCA-CGTAAAGCGTTA    162
                              ||..|||.|.|||.||.|||.|..|||| |.||.||     
BL05282          139 TGGGACGACTTGAAAAAACGAAGTGCAAAAACGCTCATCTTACAG-----    183

BSNT_02925       163 GCAATC---CTAA--GTATTTGTTTTCTTTTCTTAGTCGGTATCTGTGCT    207
                     |.||||   ||.|  .|.|||||            |.||.|||..|||  
BL05282          184 GGAATCACTCTCATCATCTTTGT------------GGCGTTATTGGTG--    219

BSNT_02925       208 TTTATCATTTTACAAGGACAGACATTGA-TGAAACGTCACCT--CTTTTT    254
                     |||.||||..|..|||||||.|||||.| ||   |.|| .||  ||||||
BL05282          220 TTTGTCATCATGAAAGGACAAACATTCATTG---CTTC-TCTGCCTTTTT    265

BSNT_02925       255 TACA-GGCAGGGAAACGATAGCGGGCA----------TTCTTTTAATAAT    293
                     |..| ||..|||||||    ||.||||          .|.|||   |..|
BL05282          266 TCGAGGGTTGGGAAAC----GCCGGCAAAATGGGTGTATATTT---TGCT    308

BSNT_02925       294 CGTTTCTTT----------AAGCATTTGTACTTTTATTT---TGAGGAGA    330
                     |||||..||          ||.|.|||   |.|.|||.|   ||| .|.|
BL05282          309 CGTTTTGTTCTTGGGATCAAACCTTTT---CATCTATATCAATGA-AAAA    354

BSNT_02925       331 ATTTCAAA-TCGGTTAAAACG----ATTGTGA    357
                     ||..|||| ||  |.||||.|    ||..|||
BL05282          355 ATAACAAACTC--TAAAAAAGAGGCATCCTGA    384


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