Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03996 and BL05286

See Amino acid alignment / Visit BSNT_03996 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:02
# Commandline: needle
#    -asequence dna-align/BSNT_03996___rarA.1.5803.seq
#    -bsequence dna-align/BL05286___yrvN.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03996___rarA-BL05286___yrvN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03996___rarA-BL05286___yrvN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03996___rarA
# 2: BL05286___yrvN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1297
# Identity:     966/1297 (74.5%)
# Similarity:   966/1297 (74.5%)
# Gaps:          62/1297 ( 4.8%)
# Score: 3533.0
# 
#
#=======================================

BSNT_03996___      1 ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTAT     50
                     |||||.|||.|.||||.|||.|||||.||.||||||||.||.||..||.|
BL05286___yrv      1 ATGAAACCACTCGCATTTCGAATGCGCCCTACAAAAATCGAAGAGGTTCT     50

BSNT_03996___     51 CGGCCAGCAGCATCTGGTGGCTGAAGATAAAATTATTGGCA--GAATGGT     98
                     |||||||.|.||.|||||.|..||||..||.||.|||  ||  |.|||||
BL05286___yrv     51 CGGCCAGGATCACCTGGTCGGGGAAGGAAAGATCATT--CATCGGATGGT     98

BSNT_03996___     99 CCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTG    148
                     .|||||.|||||..|.|||||.||||||.|||||||.||.||.||.||.|
BL05286___yrv     99 GCAGGCCAAACACCTTTCATCGATGATTCTGTACGGCCCCCCGGGCATCG    148

BSNT_03996___    149 GAAAAACATCAATCGCAACAGCAATCGCCGGTTCA--ACAAGTATTGCTT    196
                     |.|||||.||.|||||.||.||.||.|||||  ||  ||.||.||.||||
BL05286___yrv    149 GCAAAACGTCGATCGCCACGGCGATTGCCGG--CAGCACGAGCATCGCTT    196

BSNT_03996___    197 TTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAAATCGTA    246
                     |.|||||||||||.||.|||||.||.||||||||.|||||||||..|.|.
BL05286___yrv    197 TCCGAAAGCTGAACGCAGTCATCAATAATAAAAAGGATATGGAAGCCATT    246

BSNT_03996___    247 GCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGT    296
                     ||....|||||.||.|||||.||.||.||.||.||.||.||.|||||.||
BL05286___yrv    247 GCCGCCGAAGCAAAAATGTCGGGGCAGGTTATCTTAATCCTTGATGAGGT    296

BSNT_03996___    297 CCACAGGCTGGATAAAGGAAAACAGGATTTTCTATTACCCTATTTAGAAA    346
                     .|||.||||.||.|||||.||.|||||.|||||..|.||.|||||.||||
BL05286___yrv    297 GCACCGGCTTGACAAAGGCAAGCAGGACTTTCTCCTTCCGTATTTGGAAA    346

BSNT_03996___    347 ACGGGATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCC    396
                     ||||.|||||.||..|||||||.||.|||||.||.||||||||.|||||.
BL05286___yrv    347 ACGGCATGATTATCATGATCGGGGCGACGACAGCCAACCCGTACCATGCG    396

BSNT_03996___    397 ATTAATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTT    446
                     ||.||||||||||||||||||.|.||.||||||||.|||||..|.|||||
BL05286___yrv    397 ATCAATCCGGCGATCAGAAGCAGAACGCAGATTTTCGAGCTGCATCCGTT    446

BSNT_03996___    447 A-ACACCTGATCTGATTAAACAGGCACTGGAACGCGCGCTCCATGATGAG    495
                     | || |||||.|..||.|||..|||..|..||||.|||||..|.|||.|.
BL05286___yrv    447 AGAC-CCTGAACAAATCAAAACGGCCATTAAACGGGCGCTTGAAGATAAA    495

BSNT_03996___    496 CATCGGGGCCTTGGCACCTATTCTGTAT-------CCATTGATGATCAGG    538
                     ||..|.|||||.||      ||| ||||       ||.|.||||||.|||
BL05286___yrv    496 CACAGAGGCCTCGG------TTC-GTATGACGTTGCCGTCGATGATGAGG    538

BSNT_03996___    539 CGATGGAGCATTTTGCCCACGGATGCGGAGGAGATGTCCGCTCCGCTTTA    588
                     ||.|.||.|||||.||||.|||.|||||.||||||||||||||.|||||.
BL05286___yrv    539 CGCTTGACCATTTGGCCCGCGGCTGCGGCGGAGATGTCCGCTCAGCTTTG    588

BSNT_03996___    589 AATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGA    638
                     ||||||||.||.||||||||.|||||.||.|||||      |.||.||||
BL05286___yrv    589 AATGCGCTCGAACTTGCCGTATTGTCCACAAAGGA------AAACAGTGA    632

BSNT_03996___    639 ------AATTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAA    682
                           .||.|.|||||||||.||||.|||.|||||||||.|||||||||
BL05286___yrv    633 GGGAGCGATACGCATTACATTGGAAATCGCAGAAGAATGCCTGCAGAAAA    682

BSNT_03996___    683 AAAGCTTT-TCTCACGATAAAGATGGTGACGCGCATTATGATGTACTGTC    731
                     |||||||| || ||.||.||||||||.|||||||||||||||||..|.||
BL05286___yrv    683 AAAGCTTTGTC-CATGACAAAGATGGAGACGCGCATTATGATGTCATTTC    731

BSNT_03996___    732 CGCTTTTCAAAAATCGATCCGCGGCTCTGATGCCAACGCTGCTCTTCACT    781
                     |||.||.||||||||.|||.|.||||||||||.|||.|||||.||.||||
BL05286___yrv    732 CGCCTTCCAAAAATCAATCAGAGGCTCTGATGTCAATGCTGCACTGCACT    781

BSNT_03996___    782 ATTTGGCTAGATTAATTGAAGCCGGTGATCTGGAGAGCATCGCAAGACGA    831
                     |..||||.||..|.||||||||.||.|||.||||.|||.|.|||.|..|.
BL05286___yrv    782 ACATGGCAAGGCTTATTGAAGCGGGGGATTTGGAAAGCCTTGCACGGAGG    831

BSNT_03996___    832 TTGCTTGTTATCGCCTATGAAGATATCGGTTTAGCAAGCCCGCAAGCCGG    881
                     .|||||||||||||||||||.|||.||||..|.||.||.|||||.||.||
BL05286___yrv    832 CTGCTTGTTATCGCCTATGAGGATGTCGGGCTGGCGAGTCCGCAGGCTGG    881

BSNT_03996___    882 CCCTAGAGTGCTGAACGCT-------ATTCAGACCGCTGAGCGAGTCGGG    924
                        |.||    .|||||||       |||||.||.||.||.|||.||||.
BL05286___yrv    882 ---TGGA----AGAACGCTTCAAGCCATTCAAACGGCGGAACGAATCGGA    924

BSNT_03996___    925 TTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTTATTGAGCTTTGCCT    974
                     |||||.||||||.|.||.||||||||||||||.||.||||||||.|||||
BL05286___yrv    925 TTTCCGGAAGCGAGGATTCCGCTGGCCAACGCCGTGATTGAGCTCTGCCT    974

BSNT_03996___    975 CTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAG   1024
                     .||.||.|||||.|||||.||.||.||.|||.|.||.||.||.|||.|||
BL05286___yrv    975 GTCTCCTAAATCGAACTCGGCGATCCTTGCAGTTGACGAAGCGCTGTCAG   1024

BSNT_03996___   1025 ATATCAGAGCCGGAAAAATTGGTGATGTCCCGAAGCATTTAAAAGACGCG   1074
                     |..||.|..|||||||.||.||.|||||.|||||.||||||||.|||||.
BL05286___yrv   1025 ACGTCCGCTCCGGAAAGATCGGCGATGTGCCGAACCATTTAAAGGACGCC   1074

BSNT_03996___   1075 CATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAATACCC   1124
                     |||||.||||||||....||..|.||.|||||..|.||.||.|||||.||
BL05286___yrv   1075 CATTACAAAGGAGCCGCTGAGCTTGGCAGAGGTGTGGAATACAAATATCC   1124

BSNT_03996___   1125 GCACAATTACGACAGCGGTTGGGTCGAACAACAATACCTCCCTGATTCTC   1174
                     ||||.|||||||.|.|||.||||||.||||.||.|||||.||||||.|.|
BL05286___yrv   1125 GCACGATTACGAGAACGGCTGGGTCAAACAGCAGTACCTGCCTGATCCGC   1174

BSNT_03996___   1175 TGAAAAATAAGCAA----TACTATAAGCCGAAACAGACAGGAAAATTCGA   1220
                     |||||||    |||    ||||||.|||||||.|||||.||||||||.||
BL05286___yrv   1175 TGAAAAA----CAAAGTTTACTATCAGCCGAAGCAGACGGGAAAATTTGA   1220

BSNT_03996___   1221 ATCCGC-CTTAAAGCAGGTGTATGATAAATTAATGAAAAGAAAATAA   1266
                     |..||| ||.||| ||.||.||.||.||..|.||||||..|||||||
BL05286___yrv   1221 ACTCGCACTGAAA-CAAGTATACGACAAGCTGATGAAACAAAAATAA   1266


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