Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00506 and BL05310

See Amino acid alignment / Visit BSNT_00506 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:08
# Commandline: needle
#    -asequence dna-align/BSNT_00506___ycdH.1.5803.seq
#    -bsequence dna-align/BL05310___ycdH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00506___ycdH-BL05310___ycdH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00506___ycdH-BL05310___ycdH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00506___ycdH
# 2: BL05310___ycdH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1184
# Identity:     611/1184 (51.6%)
# Similarity:   611/1184 (51.6%)
# Gaps:         376/1184 (31.8%)
# Score: 1309.5
# 
#
#=======================================

BSNT_00506___      1 ATGTTTAAAAAAT--GGAGCGGTTTGTTTGTGATTGCAGCGTGCTTT--T     46
                     |||...||||.||  |||              ||.|||.| |||.||  |
BL05310___ycd      1 ATGAAAAAAACATTCGGA--------------ATAGCATC-TGCATTCAT     35

BSNT_00506___     47 TATTAGTTGCAGCAT-----GC-GGTAACTCA-----------------T     73
                     |.|| |.|||.|.||     || |||..||||                 |
BL05310___ycd     36 TCTT-GCTGCCGGATTAACAGCGGGTTGCTCAAGCAATGGAGCTTCCAGT     84

BSNT_00506___     74 CAACAAAAGGGTCGGCGGATTCAAAGGGTGATAAACTG-CACGTTG----    118
                     .|||||||.|            |||     |||||  | ||||.||    
BL05310___ycd     85 GAACAAAAAG------------AAA-----ATAAA--GACACGCTGGACA    115

BSNT_00506___    119 TC---ACAACGTTCTACCCGATGTATGAATTCACAAAACAAAT-------    158
                     ||   |||||..|.||.|||.|..|.||.|||||.|||.|.||       
BL05310___ycd    116 TCTATACAACCATTTATCCGCTTGAAGACTTCACCAAAAAGATCGGCGGA    165

BSNT_00506___    159 -----TGTAAAAGACAAAGGCGATGTGGATCTGTTAATCCCATCTTCCGT    203
                          |||.||.|..|||.|           ||||.| |||..|...|||
BL05310___ycd    166 GAATATGTGAACGTTAAAAG-----------TGTTTA-CCCGCCAAACGT    203

BSNT_00506___    204 TGAACCGCATGATTGGGAACCGACGCCGAAAGAC-ATTGCTAACAT----    248
                     ||||.||||...||..||.|| |.||..|||.|| ||.||..|.||    
BL05310___ycd    204 TGAAGCGCACACTTACGAGCC-AAGCTCAAAAACGATGGCGGAAATTTCC    252

BSNT_00506___    249 ---TCAGGATGCTGATTTGTTCGTTTATAATAGTGAATAC-ATGGAGAC-    293
                        || |||||          |.|||||        |||| .|||||.| 
BL05310___ycd    253 GACTC-GGATG----------CCTTTAT--------ATACTCTGGAGTCG    283

BSNT_00506___    294 ------ATGGGTTC-----------------------------------C    302
                           |.||.|||                                   |
BL05310___ycd    284 GTGTTGAAGGATTCGCAGACAAAGCTGTAAGCACACTTAAAAACAGCGAC    333

BSNT_00506___    303 GTCAGCTGAAA-----AAAGCATGGGCCAAGGCCA-TGCCGTTTT----C    342
                     ||||    |||     |||||..|||   |||.|| ||.|.||.|    |
BL05310___ycd    334 GTCA----AAATCGTCAAAGCCGGGG---AGGGCATTGACCTTCTGTCAC    376

BSNT_00506___    343 GTTAATGCAAGCAAAGG------TATTGATTTAATGGAAGGCTC-TGAAG    385
                     ||.||  .|||  ||||      |..|||       |.|.||.| ||.||
BL05310___ycd    377 GTGAA--GAAG--AAGGCGAACATGATGA-------GCATGCACATGGAG    415

BSNT_00506___    386 AAGAA---------CACGAAGAGCATG---ATCATGGGGAGCATGAGCAC    423
                     |||||         |||||.|||||||   ||.|.|..||.|||||.|||
BL05310___ycd    416 AAGAACACGGTGAGCACGATGAGCATGCACATGAAGAAGAACATGAACAC    465

BSNT_00506___    424 AG---------------------TCATGCA-----ATG--------GATC    439
                     .|                     |||| ||     |||        ||.|
BL05310___ycd    466 GGAGAAGCCGAAGGTCACGATCATCAT-CACGACCATGGAGATCATGACC    514

BSNT_00506___    440 CTCACGTATGGCTCAGCCCTGTTCTGGC---ACAGAAGGAAGTTAAAAAT    486
                     |.||||.||||||....|||||.||.||   |.|.|.||..|   ||||.
BL05310___ycd    515 CGCACGCATGGCTTGATCCTGTCCTTGCTGAAAAAATGGCCG---AAAAC    561

BSNT_00506___    487 ATTACGGCTCAAATCGT-------GAAGCAGGACCCGGATAACAAA----    525
                     ||||..|..|||.||||       |||.|.|.||.||   ||.|||    
BL05310___ycd    562 ATTAAAGACCAACTCGTAAAATTAGAACCTGAACACG---AAAAAACGTT    608

BSNT_00506___    526 ----GAATACTATGAG-----AAAAATAGTAAAGAATATATTGCAAAACT    566
                         .||.||||||||     ||||     |||||.|            |
BL05310___ycd    609 TACGAAAAACTATGAGTCATTAAAA-----AAAGACT------------T    641

BSNT_00506___    567 GCAGGATCTTGATAA--ACTATATCGTAC-AACCGCAAAAAAAGCGGAGA    613
                     |.||.|.|||||.||  |||   ||..|| |||.|...|.|||||.||.|
BL05310___ycd    642 GGAGCAGCTTGACAAAGACT---TCAAACAAACAGTCGACAAAGCTGATA    688

BSNT_00506___    614 AAAAAGAATTTATC-ACGCAGCATACAGCTTTTGGCTATCTGGCAAAAGA    662
                     ||||||||.||.|| .|.|| |||.|.||.|..||||| ||||.|||  |
BL05310___ycd    689 AAAAAGAAATTCTCGTCTCA-CATGCCGCCTACGGCTA-CTGGGAAA--A    734

BSNT_00506___    663 A---TACGGCTTGAAGCAG------GTTC-CGATTGCAGGGCTGTCACCT    702
                     |   ||||||.|.||||||      |||| |       ||.||.||.|||
BL05310___ycd    735 ACGCTACGGCATTAAGCAGATAAGCGTTCTC-------GGCCTTTCGCCT    777

BSNT_00506___    703 GAC-CAAGAACC-------GAGCGCAGCCAGCTTGGCAAAGC----TGAA    740
                      || .|.|||||       .||      |||||||  |||.|    |.||
BL05310___ycd    778 -ACTGAGGAACCTTCACAAAAG------CAGCTTG--AAAACATTGTTAA    818

BSNT_00506___    741 AACATATGCCAAAGAACATAATGTAAAAGTTAT--TTACTTTG-AAGAAA    787
                     ||||   ||.||||||||||||.|.|||..|||  ||  |||| |||.||
BL05310___ycd    819 AACA---GCGAAAGAACATAATATTAAATATATCATT--TTTGAAAGCAA    863

BSNT_00506___    788 TTGCATCCTCAAAGGTCGCAGATACGCTCGCCAGTGAAATCGGCGCG--A    835
                     |..||.|..|||| .||.|.||.|...||...|..||||||||.|||  |
BL05310___ycd    864 TGTCAGCAGCAAA-ATCTCCGAGATCATCAAAAAAGAAATCGGAGCGGAA    912

BSNT_00506___    836 AGACAGAAGTGCTGAATACACTGGAAGGCT-TGAGCAAAGAAGA-----A    879
                     ||.|.||  .|.||||.|..||.||| .|| |.|..||||||||     |
BL05310___ycd    913 AGTCTGA--CGATGAAAAACCTTGAA-TCTGTAACAAAAGAAGACATTGA    959

BSNT_00506___    880 CAG-GATAAAGGTTTAGGGTATATCGACATTATGAAACAAAACCTCGATG    928
                     .|| |..||||.|      ||||.||.|||.||||||.|||||||.||.|
BL05310___ycd    960 AAGCGGCAAAGAT------TATACCGCCATCATGAAAGAAAACCTGGACG   1003

BSNT_00506___    929 CCCTGAAAGATTCACTATTGGTTAAATC--ATAA    960
                     .|.|||||.|..|..||     |.||.|  ||||
BL05310___ycd   1004 TCTTGAAAAAAGCTTTA-----TCAAGCAAATAA   1032


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