Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04677 and BL05321

See Amino acid alignment / Visit BSNT_04677 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:49
# Commandline: needle
#    -asequence dna-align/BSNT_04677___yueG.1.5803.seq
#    -bsequence dna-align/BL05321___yueG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04677___yueG-BL05321___yueG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04677___yueG-BL05321___yueG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04677___yueG
# 2: BL05321___yueG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 248
# Identity:     149/248 (60.1%)
# Similarity:   149/248 (60.1%)
# Gaps:          52/248 (21.0%)
# Score: 398.0
# 
#
#=======================================

BSNT_04677___      1 ATGCCTGCAATTGTGGGGCCGATTTATATCATGTCAGTTACGGGTAATG-     49
                     |||||.||||||||.||.|||||||.|||||.|..|||   .|.|.||| 
BL05321___yue      1 ATGCCGGCAATTGTCGGACCGATTTTTATCAGGCGAGT---CGTTGATGA     47

BSNT_04677___     50 CCGCGGCAAGC----TTTGGAGACATATTTGCGATTTCGCCCAAAAGCGT     95
                     |.|||  .|||    ||||||||..|.|||||||||||.||.||    ||
BL05321___yue     48 CAGCG--CAGCCTTTTTTGGAGATGTGTTTGCGATTTCCCCGAA----GT     91

BSNT_04677___     96 CGCTC--ATTC---------AGGGGCGGGGTCAGGCGCATTTCAGCTTGG    134
                      ||.|  ||||         |||.|||      |||.|||||||....||
BL05321___yue     92 -GCACGGATTCCTCCGGAGGAGGAGCG------GGCACATTTCAAACAGG    134

BSNT_04677___    135 TGATT-----TTGTGAAGATTAACAACCAAACGAGTAAAACTCTCTTCGA    179
                     .||.|     ||     ||||.|.|||.|.|..|.||||||...||||..
BL05321___yue    135 GGACTACGGATT-----GATTCATAACGATATCAATAAAACGACCTTCAC    179

BSNT_04677___    180 AGATGCCGATATCACTGATGAAACAGTT-----TCGTTTAACGGGTAA    222
                     ||||||.|||    .||||| .||.|||     ||.||.|||..||.|
BL05321___yue    180 AGATGCGGAT----GTGATG-GACGGTTCCCAGTCATTGAACCTGTGA    222


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