Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04713 and BL05322

See Amino acid alignment / Visit BSNT_04713 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:57
# Commandline: needle
#    -asequence dna-align/BSNT_04713___yuiH.1.5803.seq
#    -bsequence dna-align/BL05322___yuiH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04713___yuiH-BL05322___yuiH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04713___yuiH-BL05322___yuiH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04713___yuiH
# 2: BL05322___yuiH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 640
# Identity:     420/640 (65.6%)
# Similarity:   420/640 (65.6%)
# Gaps:          89/640 (13.9%)
# Score: 1389.0
# 
#
#=======================================

BSNT_04713___      1 ATGTATTTCGGAAAAACAAGAC------AGTCCGATCAATCTGGAAGAGT     44
                     .|||.|||.||.|||||||.||      |||||||         .||.||
BL05322___yui      1 GTGTTTTTTGGGAAAACAAAACCGCACAAGTCCGA---------CAGGGT     41

BSNT_04713___     45 GCCGCCAAATCAAAACGTCACCACTTCATTTCCTGTGCTTCATACCGGAG     94
                     |||.|||||.|||||.|||||.||.||.||||||||.||||||.|.|||.
BL05322___yui     42 GCCTCCAAACCAAAATGTCACAACATCTTTTCCTGTTCTTCATGCAGGAC     91

BSNT_04713___     95 ATGTCCCATATTACGAAGATATGACGAAATGGAATCTTCAAGTGTACGGT    144
                     ||||.||..|.||||||||..||.|.|||||||||.|.|||.|.|||||.
BL05322___yui     92 ATGTTCCGGAATACGAAGACCTGTCAAAATGGAATTTGCAAATTTACGGA    141

BSNT_04713___    145 TTGGTTGACCATCCGATGCTGCTAAGCTTTGAAGATGTCAAAGCCTTTCC    194
                     .|.||.||.||.|||.|.|||||.|..||.||.|||        |||  |
BL05322___yui    142 CTTGTCGAACAGCCGCTCCTGCTGACGTTGGATGAT--------CTT--C    181

BSNT_04713___    195 ACGGTATG-----AATCGAA-----AAATGACATTCATTGTGTCACGGGA    234
                     |.|..|||     ||.||||     .|||||||||||||||||.||.||.
BL05322___yui    182 ATGAGATGCCGCAAAGCGAAGTGTCCAATGACATTCATTGTGTAACAGGC    231

BSNT_04713___    235 TGGTCAAGGCTTGATAATGTGTGGCAAGGCGTGCGGGCTTGTGAT-----    279
                     |||||.|.|||.||||||||.|||.||||             |||     
BL05322___yui    232 TGGTCCAAGCTCGATAATGTTTGGGAAGG-------------GATCAAGA    268

BSNT_04713___    280 --------ATAGCGGAAAAAGCGGGTGTAAA--------AGAAGAAGCTG    313
                             ||.||.||||      |.|||||        .|  |||||..
BL05322___yui    269 CAAAGGAGATCGCTGAAA------GAGTAAAGCCGCTTCCG--GAAGCCA    310

BSNT_04713___    314 GCTACGTCATTTTACATGCTGAAGAGGGCTGGACGACCAATCTGCCGCTT    363
                     |.|..|||||.||.|||||.||.||.|||||||||||.|||.|.|||||.
BL05322___yui    311 GATTTGTCATCTTGCATGCAGAGGAAGGCTGGACGACGAATGTTCCGCTC    360

BSNT_04713___    364 GATGATTTCTTAGCGGAAACTTCCCTTCTGGCTTATGCGCATAATGGCGA    413
                     ||.||.||.||...|||..|.||.|||.|||||.||.|.|||||.||||.
BL05322___yui    361 GAAGACTTTTTGAAGGATTCGTCTCTTTTGGCTCATTCCCATAACGGCGC    410

BSNT_04713___    414 ACCTTTAACCCCTGAACACGGCTTTCCGCT----GCGGGGTGTGTTTCCG    459
                     .||..|.||.||.||.||||||||||||||    |||    |||.|.|||
BL05322___yui    411 CCCGCTCACGCCGGAGCACGGCTTTCCGCTCAGAGCG----GTGATGCCG    456

BSNT_04713___    460 CATCTATATTTTTGGAAAAGCGCCAAGTGGCTGCGCGGCATCCAATTTAC    509
                     |||.|.||||||||||||||||||||.||||||.|.|||||.||.|||||
BL05322___yui    457 CATTTGTATTTTTGGAAAAGCGCCAAATGGCTGAGGGGCATTCAGTTTAC    506

BSNT_04713___    510 GAAAGAAAATCACCCTGGCTTTTGGGAGCGGAATGGCTATCACATGAGAG    559
                     .||.|||||.||.||.||||||||||||...||.|||||.||..|.||.|
BL05322___yui    507 AAAGGAAAACCATCCGGGCTTTTGGGAGAAAAACGGCTACCATCTTAGGG    556

BSNT_04713___    560 GCGACCCTTGGCAAAATCAAAGGTTTACA--TGGGATTAA    597
                     |..|.||.|||.||.|..||||  .||||  |..|||||.
BL05322___yui    557 GAAATCCGTGGAAAGAAGAAAG--ATACAGCTTTGATTAG    594


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