Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05278 and BL05350
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:22
# Commandline: needle
# -asequence dna-align/BSNT_05278.1.5803.seq
# -bsequence dna-align/BL05350___yvdC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05278-BL05350___yvdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05278-BL05350___yvdC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05278
# 2: BL05350___yvdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 340
# Identity: 152/340 (44.7%)
# Similarity: 152/340 (44.7%)
# Gaps: 134/340 (39.4%)
# Score: 490.0
#
#
#=======================================
BSNT_05278 0 -------------------------------------------------- 0
BL05350___yvd 1 ATGACAATCACAGACGCGGAGCAATGGACAAAGGCATTTTACAGGGAAAG 50
BSNT_05278 0 -------------------------------------------------- 0
BL05350___yvd 51 AGGATGGAGCGAATACGGACCTTTCATCAGGATGGGATTTTTAATGGAAG 100
BSNT_05278 1 -----------TTGGCCCGGGCTGTCAGGGCGTATGAAATCGGCAGAGAC 39
.||||..|.||.||.||.||.||.||||||||.||.|||
BL05350___yvd 101 AGGCTGGCGAACTGGCGAGAGCGGTTAGAGCATACGAAATCGGAAGGGAC 150
BSNT_05278 40 CGGCCGGATGAGAAAG--AATCGTCACGC-GCTGAGCAAAAACAAGAATT 86
||.|| |||..||| ||.||.|..|| |||||.|..|||.|||||.|
BL05350___yvd 151 CGTCC---TGACGAAGCAAAACGGCCGGCTGCTGAACTGAAAAAAGAACT 197
BSNT_05278 87 GATTGAAGAAATGGGAGATGTCATCGGAAATATCGCCATTCTTGCTGATA 136
|||.|||||||||||.|||||.||.||.|||.|...|||.|||||.|..|
BL05350___yvd 198 GATCGAAGAAATGGGCGATGTAATGGGGAATTTGATCATGCTTGCCGGCA 247
BSNT_05278 137 TGTATGGTGTCTCTTTAGAAGACGTCATGAAGGCCCACCAAGAAAAACTG 186
|.||.|||||.||.||.||||||.|.|||.|.|||||.|.....||||||
BL05350___yvd 248 TATACGGTGTTTCATTGGAAGACATGATGGATGCCCATCGCTGCAAACTG 297
BSNT_05278 187 ACAAAACGATTT------GAGCATGCATAA---------- 210
||..|||||||| |||||| |||.|
BL05350___yvd 298 ACGGAACGATTTGCAGGAGAGCAT-CATCAAGATCAATGA 336
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