Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05677 and BL05358

See Amino acid alignment / Visit BSNT_05677 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:47
# Commandline: needle
#    -asequence dna-align/BSNT_05677___rpoE.1.5803.seq
#    -bsequence dna-align/BL05358___rpoE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05677___rpoE-BL05358___rpoE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05677___rpoE-BL05358___rpoE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05677___rpoE
# 2: BL05358___rpoE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 530
# Identity:     406/530 (76.6%)
# Similarity:   406/530 (76.6%)
# Gaps:          37/530 ( 7.0%)
# Score: 1561.0
# 
#
#=======================================

BSNT_05677___      1 TTGGGTATCAAACAATATTCACAGGAAGAGCTAAAGGAAATGGCTTTAGT     50
                     .||.||.|.||||||||.|||.|||||.||||||||||||||||||||||
BL05358___rpo      1 ATGAGTTTGAAACAATACTCAGAGGAACAGCTAAAGGAAATGGCTTTAGT     50

BSNT_05677___     51 TGAAATCGCTCACGAATTATTT----GAAGAACATAAAAAACCAGTTCCT     96
                     |||||||||..|||||  ||||    |  |||||.||||||||..||.|.
BL05358___rpo     51 TGAAATCGCATACGAA--ATTTTCTCG--GAACACAAAAAACCGATTACA     96

BSNT_05677___     97 TTTCAGGAGCTTTTAAATGAAATCGCATCTTTGCTCGGCGTGAAAAAAGA    146
                     ||.||||||||...|.||.||.|.||.||.|||||.||..||...|||||
BL05358___rpo     97 TTCCAGGAGCTAACAGATCAAGTGGCTTCCTTGCTTGGAATGGGGAAAGA    146

BSNT_05677___    147 AGAGCTTGGAGACCGCATCGCTCAATTTTATACAGATTTAAACATTGACG    196
                     ||||||.|.||||||||||||.||.||.||.|||||||||||.||.||||
BL05358___rpo    147 AGAGCTGGAAGACCGCATCGCCCAGTTCTACACAGATTTAAATATCGACG    196

BSNT_05677___    197 GCCGCTTCCTGGCGCTATCTGACCAGACGTGGGGGCTTCGCAGCTGGTAT    246
                     |.|||||..|||||||.||.|||||.||||||||.||.||||||||||||
BL05358___rpo    197 GACGCTTTTTGGCGCTGTCAGACCAAACGTGGGGCCTGCGCAGCTGGTAT    246

BSNT_05677___    247 CCGTATGATCAGCTTGATGAAGAAACTCAGCCGACAGTCAAGGCGAAAAA    296
                     ||||||||||||||||||||||||||.||||||||.||.||.||||||||
BL05358___rpo    247 CCGTATGATCAGCTTGATGAAGAAACCCAGCCGACTGTAAAAGCGAAAAA    296

BSNT_05677___    297 GAAAAAAGCGAAGAAAGCAGTCGAAGAAGATCTTGATCTTGACGAGTTTG    346
                     ||||||||||||.|||||.||.|||||||||||||||||||||||.||.|
BL05358___rpo    297 GAAAAAAGCGAAAAAAGCGGTTGAAGAAGATCTTGATCTTGACGAATTCG    346

BSNT_05677___    347 AAGAGATCGACGAAGACGACCTTGATTTGGATGAAGTTGAGGAAGAACTC    396
                     ||||.||||||||.||.||..||..|.|.||.||.||.||.|||||..|.
BL05358___rpo    347 AAGAAATCGACGAGGATGATATTCTTCTTGACGATGTCGAAGAAGATTTG    396

BSNT_05677___    397 GATCTTGAAGCCGACGATTTTGACGATGAAGATCTTGACGAAGACGACGA    446
                     ||..||||.|||||.||.||   ||||||| |||  ||.||||.||||||
BL05358___rpo    397 GACATTGACGCCGATGAATT---CGATGAA-ATC--GATGAAGCCGACGA    440

BSNT_05677___    447 CGAT---CTTGA-GATC--GAAGAAGATAT------TGTTGATGAAGATG    484
                     .|||   ||.|| ||||  |||||.||.||      ||.||||||||||.
BL05358___rpo    441 TGATGAGCTGGATGATCTTGAAGACGAGATCCTGGATGATGATGAAGATT    490

BSNT_05677___    485 ATGAAGAAGAGGAA-------ATTAAATAG    507
                     .|||.|||||||||       |.|||    
BL05358___rpo    491 TTGATGAAGAGGAAGACGAAGAGTAA----    516


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