Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01226 and BL07035

See Amino acid alignment / Visit BSNT_01226 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:44
# Commandline: needle
#    -asequence dna-align/BSNT_01226.1.5803.seq
#    -bsequence dna-align/BL07035.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01226-BL07035.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01226-BL07035.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01226
# 2: BL07035
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 541
# Identity:     230/541 (42.5%)
# Similarity:   230/541 (42.5%)
# Gaps:         242/541 (44.7%)
# Score: 438.5
# 
#
#=======================================

BSNT_01226         1 ATGTATTATGTTGATCCTTATATGTTTGCGGGGCATTTTTAT------GA     44
                                                         ||.|||      ||
BL07035            1 ------------------------------------TTGTATCCATACGA     14

BSNT_01226        45 GCCTTGGC-CTGCTTTTGAATATGAATACCGATATCCATGGCCTGGCATT     93
                     .||||  | ||        ||||||  .||| ||||    |||.|..|||
BL07035           15 TCCTT--CACT--------ATATGA--TCCG-TATC----GCCAGCAATT     47

BSNT_01226        94 GGCAGCGGTGCTG-TTCCGGGCTCTG----------------GCGGCGGC    126
                     ..|..|||.||.| .||||||..|.|                ||.||.||
BL07035           48 TCCGCCGGGGCCGCCTCCGGGAGCAGGAGGACAGCAGCAACAGCAGCTGC     97

BSNT_01226       127 TCCGGCCCTGGCATTGGCGGCGGTGCTGTTCCAGGCTTTGGCGGC--GGC    174
                     |||  |||            ||..||.|..|||  .|||  |.||  |.|
BL07035           98 TCC--CCC------------CGCCGCCGAGCCA--ATTT--CCGCAAGAC    129

BSNT_01226       175 TCCGGCCCT--GGTATTGGCAGCGGTGCCAGCCCAGGCTTCGGCGGTGCG    222
                     |||||||||  ||||||.||  ||.||  |.||       .|||||    
BL07035          130 TCCGGCCCTTCGGTATTTGC--CGTTG--ATCC-------TGGCGG----    164

BSNT_01226       223 CCGCAGGGACCTCCTCCTTCCCAAATACCAGCGAAACCCCCAAAACCGCA    272
                                            |||                      ||
BL07035          165 -----------------------AAT----------------------CA    169

BSNT_01226       273 GGGTTCTCAAGGAGCCGTTTTGTTAATTGAACCAATCACCATTCGTCCTT    322
                     |       |||..|||    ||||.|  ||..||     |.|||.|||  
BL07035          170 G-------AAGATGCC----TGTTCA--GATACA-----CGTTCATCC--    199

BSNT_01226       323 GCCTTTTCCGATTTACCTATGTTTGGTTAACCAATGGCCGCTCATTTTGG    372
                                             |.||.|..||.|||.||...||||||
BL07035          200 ------------------------GCTTGAGAAACGGCAGCCGTTTTTGG    225

BSNT_01226       373 TTTTACCCGATCATCCTTGGCAGAAGATCCGTCGGCGGCTTTTATT--GG    420
                     ||.||||||.|..||.|.||        ||||||     ||..|||  ||
BL07035          226 TTCTACCCGGTTTTCGTCGG--------CCGTCG-----TTCGATTGCGG    262

BSNT_01226       421 GATTCCTC-----ACGGCG------CCGCTGGGTTTATTTCGCCTTAGAC    459
                     |.|.||.|     .|.|||      ||||||||||||.||||...|.|||
BL07035          263 GCTACCGCTGGAGGCCGCGTCAATTCCGCTGGGTTTACTTCGGTATTGAC    312

BSNT_01226       460 ----AC-AAATCACATCGATGTTGTAAGCTGCTCATTTTAA    495
                         || |.|||||.||     |.|.||||| |||  .|||
BL07035          313 CTGAACGAGATCACTTC-----TTTCAGCTG-TCA--GTAA    345


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