Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04612 and BL07054
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:45
# Commandline: needle
# -asequence dna-align/BSNT_04612.1.5803.seq
# -bsequence dna-align/BL07054.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04612-BL07054.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04612-BL07054.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04612
# 2: BL07054
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 307
# Identity: 136/307 (44.3%)
# Similarity: 136/307 (44.3%)
# Gaps: 125/307 (40.7%)
# Score: 277.5
#
#
#=======================================
BSNT_04612 1 ------------ATGACGATCTTTCAAAGAACGATCGTGGT----TTTAA 34
||||.|.|||||...|.|..|||||..|| ||
BL07054 1 ATGTCCTGTTTAATGAGGCTCTTTTTCATACTGATCGGAGTCCAGTT--- 47
BSNT_04612 35 TCGGTACGCAGCTGGCGGCATCCGCGGT-GATTTTGTTTATTTTCGATTT 83
|.|||||||.|| || .|||...||.|||||.|||||
BL07054 48 ----------GATGGCGGCGTC----GTCCATTCAATTCATTTTTGATTT 83
BSNT_04612 84 GAA-TTCATATAATCACTTTTCCGGCAGCTTCTCCTG----GTTTT---- 124
.|| ..|.|.| |||| |||| |||..|| |||.|
BL07054 84 AAACGCCGTGT-ATCA---TTCC-------TCTGATGAGGTGTTCTGGAG 122
BSNT_04612 125 ---ATTTTCTGAAAGAACTGGCC----GGCAGTTTCGCCTTT-TATT--- 163
||||| |.||.||.|||..| ||| ||||||| ||.|
BL07054 123 GGAATTTT-TCAAGGAGCTGTTCACTAGGC-----CGCCTTTATACTTCA 166
BSNT_04612 164 TGTTTTCAGCA---GGCCTGTTCTTTTTGCTGATTGGATTCTGTGCTCCA 210
||.||||||.| |..|||.|||||.|...|.||.|.||
BL07054 167 TGATTTCAGGAATGGTGCTGATCTTTATCGGGGTTTGTTT---------- 206
BSNT_04612 211 AGCCG-GAAGAA--AAAGCGCATTTCTGTACACGGGAAAGAAAACTCATT 257
|||| |||||| |||..|
BL07054 207 -GCCGCGAAGAAACAAATAG------------------------------ 225
BSNT_04612 258 AAAATAA 264
BL07054 225 ------- 225
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