Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00006 and BPUM_0006
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:56
# Commandline: needle
# -asequence dna-align/BSNT_00006___gyrB.1.24716.seq
# -bsequence dna-align/BPUM_0006___gyrB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00006___gyrB-BPUM_0006___gyrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00006___gyrB-BPUM_0006___gyrB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00006___gyrB
# 2: BPUM_0006___gyrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1945
# Identity: 1482/1945 (76.2%)
# Similarity: 1482/1945 (76.2%)
# Gaps: 44/1945 ( 2.3%)
# Score: 5604.0
#
#
#=======================================
BSNT_00006___ 1 ------------ATGGAACAGCAGCAAAACAGTTATGATGAAAATCAGAT 38
|||||||||||.||.||.||||||||||||||||||||
BPUM_0006___g 1 ATGTACGTGGCAATGGAACAGCAACATAATAGTTATGATGAAAATCAGAT 50
BSNT_00006___ 39 ACAGGTACTAGAAGGATTGGAAGCTGTTCGTAAAAGACCGGGGATGTATA 88
||||||.||.||||||.|.|||||||||.|.|||.|.||.||.|||||.|
BPUM_0006___g 51 ACAGGTGCTTGAAGGACTAGAAGCTGTTAGAAAACGTCCAGGAATGTACA 100
BSNT_00006___ 89 TCGGTTCGACAAACAG---CAAAGGCCTTCACCACCTGGTATGGGAAATT 135
|.|| |.|||.||| .|||||.||||||||.||.||||||||||||
BPUM_0006___g 101 TTGG---GTCAACCAGTGCAAAAGGACTTCACCATCTTGTATGGGAAATT 147
BSNT_00006___ 136 GTCGACAATAGTATTGACGAAGCCCTCGCCGGTTATTGTACGGATATCAA 185
||||||||.||||||||.||.||..|.||.||.|||||.||.|||||.|.
BPUM_0006___g 148 GTCGACAACAGTATTGATGAGGCTTTAGCTGGATATTGCACAGATATTAC 197
BSNT_00006___ 186 TATCCAAATCGAAAAAGACAACAGTATCACGGTTGTAGATAATGGCCGCG 235
..|.|||||.|||||.||.||.||.||.||.||...|||||||||.||||
BPUM_0006___g 198 CGTGCAAATTGAAAAGGATAATAGCATTACAGTGAAAGATAATGGTCGCG 247
BSNT_00006___ 236 GTATTCCAGTCGGTATTCATGAAAAAATGGGCCGTCCTGCGGTAGAAGTC 285
|.|||||.||.||.||||||||.||||||||.||||||||.|||||.||.
BPUM_0006___g 248 GAATTCCTGTTGGGATTCATGAGAAAATGGGACGTCCTGCTGTAGAGGTT 297
BSNT_00006___ 286 ATTATGACGGTACTTCATGCCGGAGGAAAATTTGACGGAAGCGGCTATAA 335
||||||||.||.|||||.||.||.||.|||||||||||.||.||.|||||
BPUM_0006___g 298 ATTATGACTGTTCTTCACGCTGGCGGTAAATTTGACGGCAGTGGTTATAA 347
BSNT_00006___ 336 AGTATCCGGAGGATTACACGGTGTAGGTGCGTCTGTCGTAAACGCACTAT 385
||||||.||.||..|.||.||.|||||.||.|||||.||.||.||..|||
BPUM_0006___g 348 AGTATCTGGCGGTCTGCATGGCGTAGGGGCATCTGTTGTTAATGCGTTAT 397
BSNT_00006___ 386 CAACAGAGCTT-GATGTGACGGTTCACCGTGACGGTAAAATTCACCGCCA 434
|.|| ||.||| ||.|||||.||..|.|||||.||.||||||||
BPUM_0006___g 398 CTAC-GACCTTAGACGTGACCGTATATCGTGATGGGAAAATTCA------ 440
BSNT_00006___ 435 AACTTAT---------AAACGCGGAGTTCCGGTTACAGACCTTGAAATCA 475
|||| ||||||||.|||||.|||..|||..|.||.||||
BPUM_0006___g 441 ---TTATCAACAATTCAAACGCGGTGTTCCAGTTGGAGATTTAGAGATCA 487
BSNT_00006___ 476 TTGGCGAAACGGATCATACAGGAACGACGACACATTTTGTCCCGGACCCT 525
||||.|||||.|||..||||||.||.||.||.||||||||.||.||.||.
BPUM_0006___g 488 TTGGTGAAACAGATGTTACAGGGACAACCACTCATTTTGTGCCAGATCCA 537
BSNT_00006___ 526 GAAATTTTCTCAGAAACAACCGAGTATGATTATGATCTGCTTGCCAACCG 575
||||||||..|.|||||.|..||.|.||||||.||....|||||.|||||
BPUM_0006___g 538 GAAATTTTTACTGAAACCATTGAATTTGATTACGACACACTTGCTAACCG 587
BSNT_00006___ 576 CGTACGTGAATTAGCCTTTTTAACAAAGGGCGTAAACATCACGATTGAGG 625
.||||||||||||||.||.||||||||.||.||||||||||..|||||.|
BPUM_0006___g 588 TGTACGTGAATTAGCTTTCTTAACAAAAGGTGTAAACATCATTATTGAAG 637
BSNT_00006___ 626 ATAAACGTGAAGGACAAGAGCGCAAAAATGAATACCATTACGAAGGCGGA 675
||..|||.|||||..||||.||...||||||||||...|||||||||||.
BPUM_0006___g 638 ATTTACGCGAAGGTAAAGAACGACGAAATGAATACTGCTACGAAGGCGGT 687
BSNT_00006___ 676 ATTAAAAGTTATGTAGAGTATTTAAACCGCTCTAAAGAGGTTGTCCATGA 725
|||||.||.||||||||..|||||||.|||||.|||||.||.||.|||||
BPUM_0006___g 688 ATTAAGAGCTATGTAGAACATTTAAATCGCTCAAAAGAAGTCGTTCATGA 737
BSNT_00006___ 726 AGAGCCGATTTACATTGAAGGCGAAAAGGACGGCATTACGGTTGAAGTGG 775
|||.||..|||||||.|||||.||||..|||||.||||||||||||||||
BPUM_0006___g 738 AGAACCTGTTTACATCGAAGGTGAAAGAGACGGAATTACGGTTGAAGTGG 787
BSNT_00006___ 776 CTTTGCAATACAATGACAGCTACACAAGCAACATTTACTCGTTTACAAAC 825
|.||.|||||.||.||...|||.|||||||||||.||.||.||..|.|||
BPUM_0006___g 788 CATTACAATATAACGATTCCTATACAAGCAACATCTATTCCTTCGCCAAC 837
BSNT_00006___ 826 AACATTAACACGTACGAAGGCGGTACCCATGAAGCTGGCTTCAAAACGGG 875
||.||.||||||||.||||||||.||.||.|||||.|||||.|||||.||
BPUM_0006___g 838 AATATCAACACGTATGAAGGCGGAACACACGAAGCAGGCTTTAAAACAGG 887
BSNT_00006___ 876 CCTGACTCGTGTTATCAACGATTACGCCAGAAAAAAAGGGCTTATT-AAA 924
.|||||.|||||.|||||.|||||.||..| .|||||.|||.|||| |||
BPUM_0006___g 888 TCTGACGCGTGTGATCAATGATTATGCTCG-TAAAAATGGCGTATTCAAA 936
BSNT_00006___ 925 GAAAATGATCCAAACCTAAGCGGAGATGACGTAAGGGAAGGGCTGACAGC 974
||....||..|.||..|.|||||.||.||.||..|.|||||..|.|||||
BPUM_0006___g 937 GATGGAGACTCGAATTTGAGCGGTGAAGATGTGCGAGAAGGCTTAACAGC 986
BSNT_00006___ 975 GATTATTTCAATCAAACACCCTGATCCGCAGTTTGAGGGCCAAACGAAAA 1024
.|||||.||.||||||||.||.|||||.||.||.||.||.||||||||.|
BPUM_0006___g 987 CATTATCTCTATCAAACATCCAGATCCTCAATTCGAAGGGCAAACGAAGA 1036
BSNT_00006___ 1025 CAAAGCTGGGCAACTCAGAAGCACGGACGATCACCGA-TACGTTATTTTC 1073
|||||||.||.||||||||||||.|.||.||.||||| |.|.|| ||.||
BPUM_0006___g 1037 CAAAGCTTGGGAACTCAGAAGCAAGAACCATTACCGACTCCCTT-TTCTC 1085
BSNT_00006___ 1074 TACGGCGATGGAAACATTTATGCTGGAAAATCCAGATGCAGCCAAAAAAA 1123
|...||..|.||.|.|||..|..|.||.||.||.|||||.||.||.||||
BPUM_0006___g 1086 TGAAGCACTTGAGAAATTCCTCTTAGAGAACCCTGATGCGGCAAAGAAAA 1135
BSNT_00006___ 1124 TTGTCGATAAAGGCTTAATGGCGGCAAGAGCAAGAATGGCTGCGAAAAAA 1173
||||.||.||||||.|.|||||.||..|.||||||||||||||.|||||.
BPUM_0006___g 1136 TTGTGGAGAAAGGCGTGATGGCAGCTCGTGCAAGAATGGCTGCCAAAAAG 1185
BSNT_00006___ 1174 GCCCGTGAACTAACACGTCGTAAGAGTGCTTTGGAAATTTCAAACCTGCC 1223
||.|||||.||.|||.|.|||||.||.||..|||||.|.||.|.|.|.||
BPUM_0006___g 1186 GCACGTGAGCTGACAAGACGTAAAAGCGCACTGGAAGTCTCCAGCTTACC 1235
BSNT_00006___ 1224 CGGTAAGTTAGCGGACTGCTCTTCAAAAGATCCGAGCATCTCCGAGTTAT 1273
.||.||..||||||||||.|||||.|||||.||...||||||.||..|.|
BPUM_0006___g 1236 GGGGAAACTAGCGGACTGTTCTTCTAAAGACCCATCCATCTCTGAACTCT 1285
BSNT_00006___ 1274 ATATCGTAGAGGGTGACTCTGCCGGAGGATCTGCTAAACAAGGACGCGAC 1323
|||||||||||||.||.||.||.||.|||||||||||.|||||.||.||.
BPUM_0006___g 1286 ATATCGTAGAGGGAGATTCAGCGGGCGGATCTGCTAAGCAAGGTCGTGAT 1335
BSNT_00006___ 1324 AGACATTTCCAAGCCATTTTGCCGCTTAGAGGTAAAATCCTAAACGTTGA 1373
.|.||.||||||||||||||||||.|.|||||.||.||||||||||||||
BPUM_0006___g 1336 CGTCACTTCCAAGCCATTTTGCCGTTAAGAGGGAAGATCCTAAACGTTGA 1385
BSNT_00006___ 1374 AAAGGCCAGACTGGATAAAATCCTTTCTAACAACGAAGTTCGCTCTATGA 1423
|||.||..||||.||||||||.||.||.||||||||.|||||.||.||||
BPUM_0006___g 1386 AAAAGCGCGACTAGATAAAATTCTATCGAACAACGAGGTTCGTTCAATGA 1435
BSNT_00006___ 1424 TCACAGCGCTCGGCACAGGTATTGGGGAAGACTTCAACCTTGAGAAAGCC 1473
|.|||||..|.||.||.||.||.||.|||||||||||..|.|||||.||.
BPUM_0006___g 1436 TTACAGCATTAGGAACTGGAATCGGAGAAGACTTCAATTTAGAGAAGGCT 1485
BSNT_00006___ 1474 CGTTACCACAAAGTTGTCATTATGACAGATGCCGATGTTGACGGCGCGCA 1523
||.||.|||||||||||.||||||||||||||||||||.||.||.|||||
BPUM_0006___g 1486 CGCTATCACAAAGTTGTGATTATGACAGATGCCGATGTGGATGGAGCGCA 1535
BSNT_00006___ 1524 CATCAGAACACTGCTGTTAACGTTCTTTTACAGATATATGCGCCAAATTA 1573
|||..||||.|||||..||||.|||||.||..|.||.|||||..||||.|
BPUM_0006___g 1536 CATTCGAACGCTGCTTCTAACATTCTTCTATCGCTACATGCGTGAAATCA 1585
BSNT_00006___ 1574 TCGAAAATGGCTACGTGTACATTGCACAGCCGCCGCTCTACAAGGTTCAA 1623
|.|||||.||.||.|||||.|||||||||||.||..|.||.||.||.|||
BPUM_0006___g 1586 TTGAAAACGGTTATGTGTATATTGCACAGCCACCTTTATATAAAGTGCAA 1635
BSNT_00006___ 1624 CAGGGGAAACGTGTTGAATATGCGTACAATGACAAGGAGCTTGAAGAGCT 1673
||.||.|||||||||||.||.|.|||.||.||.||..||||.||.|||||
BPUM_0006___g 1636 CAAGGAAAACGTGTTGAGTACGTGTATAACGATAAACAGCTAGACGAGCT 1685
BSNT_00006___ 1674 GTTAAAAACTCTTCCTCAAACGCCTAAGCCTGGACTGCAGCGTTACAAAG 1723
|||.|||.|.|||.|||||||.||.||.||||||||.||||||||.||||
BPUM_0006___g 1686 GTTGAAATCACTTTCTCAAACACCAAAACCTGGACTTCAGCGTTATAAAG 1735
BSNT_00006___ 1724 GTCTTGGTGAAATGAATGCCACCCAGCTATGGGAGACAACCATGGATCCT 1773
|||||||.|||||||||||..|.|||||.|||||.|||||.|||||||||
BPUM_0006___g 1736 GTCTTGGAGAAATGAATGCAGCTCAGCTTTGGGAAACAACAATGGATCCT 1785
BSNT_00006___ 1774 AGCT-CCAGAACACTTCTTCAGGTAACTCTTGAAGATGCAATGGATGCGG 1822
|.| |.||||||||||||||.||.||.|||||.||||||||.|||||.|
BPUM_0006___g 1786 -GATGCGAGAACACTTCTTCAAGTGACACTTGAGGATGCAATCGATGCTG 1834
BSNT_00006___ 1823 ACGAGACTTTTGAAATGCTTATGGGCGACAAAGTAGAACCGCGCCGAAAC 1872
|.|||||.|||||||||||.|||||.||.||||||||.|||.|..|||||
BPUM_0006___g 1835 ATGAGACATTTGAAATGCTCATGGGAGATAAAGTAGAGCCGAGAAGAAAC 1884
BSNT_00006___ 1873 TTCATAGAAGCGAATGCGAGATACGTTAAAAATCTTGACATCTAA 1917
||.||.||||..||||||..||||||.|||||.||.||.||.||.
BPUM_0006___g 1885 TTTATCGAAGAAAATGCGCAATACGTGAAAAACCTCGATATTTAG 1929
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