Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00058 and BPUM_0010

See Amino acid alignment / Visit BSNT_00058 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:59
# Commandline: needle
#    -asequence dna-align/BSNT_00058___yaaN.1.24716.seq
#    -bsequence dna-align/BPUM_0010___yaaN.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00058___yaaN-BPUM_0010___yaaN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00058___yaaN-BPUM_0010___yaaN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00058___yaaN
# 2: BPUM_0010___yaaN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1310
# Identity:     545/1310 (41.6%)
# Similarity:   545/1310 (41.6%)
# Gaps:         592/1310 (45.2%)
# Score: 1217.0
# 
#
#=======================================

BSNT_00058___      1 ATGAACCGAGACCAAAGCGACCTTCATATAGATGAATTATTGGCAGATCC     50
                                                                       
BPUM_0010___y      0 --------------------------------------------------      0

BSNT_00058___     51 TTTTGGTGGTAACATAGAGATACCAGGTTCGGAGGCTGTAAAAGCAGAGA    100
                                                                       
BPUM_0010___y      0 --------------------------------------------------      0

BSNT_00058___    101 AAGAGCAAGTACGGCTTGTTGATGTTCTTCCTGAGGAAAACAAGGAAAAA    150
                                                                       
BPUM_0010___y      0 --------------------------------------------------      0

BSNT_00058___    151 GCAATTCAGCTTGCTGGACAGATTGATCATAAAAATATGCAAAGCATTGT    200
                                                                       
BPUM_0010___y      0 --------------------------------------------------      0

BSNT_00058___    201 CTTATACGGTTCACAAGCTCAATCTAAACTGCTGAACTTTTCTCATGATA    250
                                                                      |
BPUM_0010___y      1 -------------------------------------------------A      1

BSNT_00058___    251 TGATTAATCATGTTCAAAAGAAGGATGTCGGGGAGATTGGCGAAATACTT    300
                     ||||.||..|||||.|.||.||.|||.||     |||    .|||||   
BPUM_0010___y      2 TGATGAAATATGTTGAGAAAAAAGATATC-----GAT----CAAATA---     39

BSNT_00058___    301 GGAGA---GCTGATGAAAAAGC-----TGGAGCA---------AGTAAAT    333
                     |||||   |||  ||   |.||     ||.||||         |||..|.
BPUM_0010___y     40 GGAGACGTGCT--TG---AGGCCTTTTTGCAGCAGTTACATGTAGTGGAG     84

BSNT_00058___    334 CCTGATGATCT----CCAATCTAAGAAAAAGGGTATTTTGGCACGCATGT    379
                     ||.||.|||.|    |    |.||||||.||||..||||          |
BPUM_0010___y     85 CCAGAGGATTTGGTGC----CGAAGAAACAGGGCTTTTT----------T    120

BSNT_00058___    380 TTGGAAGAGTATCAA----------GTTCTCTTCAAGAG----------G    409
                     |||.||..||.||||          |.|||..|||.|||          |
BPUM_0010___y    121 TTGAAATGGTTTCAACGCGATAAGCGATCTACTCAGGAGACCATATCACG    170

BSNT_00058___    410 TGCTGTCTAAATACCAAAAGACCAGTGTGCAGATAGACAGA--ATCAGCT    457
                     |  |.||.|.||.|.|||..|        |||||.||.|||  .||||| 
BPUM_0010___y    171 T--TTTCGACATGCAAAATCA--------CAGATCGAGAGATTGTCAGC-    209

BSNT_00058___    458 TGAA-GCTGGAGCACTCTAAAAATGC---------TTTAATCAGTGACAA    497
                       || |||         |.||.||||         .||||||...|||.|
BPUM_0010___y    210 --AAGGCT---------TCAATATGCAAGAGGCGTATTAATCTCGGACCA    248

BSNT_00058___    498 CAAGCTGTTAGAGCAGTTATATGAAAAAAATAAAGAATATTTTGCC--GC    545
                     .|.|.|.|||||||..||||.||||.|||||.||...|||||  ||  |.
BPUM_0010___y    249 TATGTTATTAGAGCGTTTATTTGAAGAAAATCAAACGTATTT--CCAAGA    296

BSNT_00058___    546 GCTGAATGTTTATATTGCTGCAGGAGAACTGAAGCTGGAGGAATTAAAAA    595
                     |.|||          .|||||||          |.||.||.|.||.||.|
BPUM_0010___y    297 GATGA----------CGCTGCAG----------GTTGCAGCAGTTGAAGA    326

BSNT_00058___    596 CGAAAACAATTCC-TGAACTGA-AGCAACAGGCT------GAATCGAGTG    637
                      |||||.||  || ||   |.| ||||.|||.||      |||.||    
BPUM_0010___y    327 -GAAAATAA--CCATG---TTAGAGCAGCAGCCTCTTTCAGAAACG----    366

BSNT_00058___    638 ATCATAACCAAAT-----------GGCCGTTCAAGAGG------TGAATG    670
                             |||||           ||.||||  |||||      || |||
BPUM_0010___y    367 --------CAAATTTCTGTTGAACGGACGTT--AGAGGAGCAATTG-ATG    405

BSNT_00058___    671 ATT---TAATTCAAT-TTGCTGA----CCGGTTAGATAAAAGG-------    705
                     |.|   .||.||||| |.|..||    ..||..|||..|||||       
BPUM_0010___y    406 AGTCAAGAAGTCAATGTAGAAGAGTATATGGAGAGACTAAAGGAACGAAA    455

BSNT_00058___    706 GTGCATGATTTGTTGCTGAGCAGGCAAGTTACAATTCAAAGTGCACCGCA    755
                     ||  ||||||||.||.|.|||.||||..||.||.|.|||.||....|.||
BPUM_0010___y    456 GT--ATGATTTGCTGTTAAGCCGGCAGATTGCATTGCAATGTAATGCTCA    503

BSNT_00058___    756 AATCAGGCTGATTCAAAATACAAACCAAGCGTTAGCTGAAAAGATTCAGT    805
                     |||..||.||||.||..||||.||.||..|.||.|||.|..|.|||||  
BPUM_0010___y    504 AATTCGGATGATCCAGCATACGAATCATACATTGGCTAATCACATTCA--    551

BSNT_00058___    806 CATCCATTGTGACAG---CGATTCCGTTATGGAAAAATCAAGTTGCCATT    852
                      |||.|..||..|||   |.|||||..||||||..||.|||.|..|.|||
BPUM_0010___y    552 -ATCAACAGTTTCAGCCTCTATTCCTCTATGGATCAACCAAATGTCGATT    600

BSNT_00058___    853 GCGCTGACGCTTTTAAGGCAGCG---CAATGCAGTGGATGCACAACAGAA    899
                     ||..|.||||.|.||..||||||   ||||.||      ||.|.|.||| 
BPUM_0010___y    601 GCATTAACGCATATACAGCAGCGGGCCAATTCA------GCTCTAGAGA-    643

BSNT_00058___    900 AGTATCTGATACAACCAATGAGCTTTTGCTGAAAAATGCGGAGCTTTTAA    949
                                                ||.|||            ||.||
BPUM_0010___y    644 ---------------------------GCCGAA------------TTCAA    654

BSNT_00058___    950 AAACCA-ATACAATTG-----AAACTGCACGGGCAAA----TGAAAGAGG    989
                     |||.|| ||..||.||     ||.|.|||.|||||.|    || ||||||
BPUM_0010___y    655 AAAACATATGAAAATGTATCAAAGCAGCAGGGGCAGATTCTTG-AAGAGG    703

BSNT_00058___    990 C--CTTGTTGATA-------TAGATACCTTGAAGAAGGTGCAGGAAAGCT   1030
                     |  |||     ||       |||||||.|||||..||||.|    ||..|
BPUM_0010___y    704 CATCTT-----TATCCCCTGTAGATACATTGAAACAGGTTC----AACGT    744

BSNT_00058___   1031 TAATAAGCACGCTTGAAGAAACACTGACTATACAAGAA-----------G   1069
                     .|||.|||     ||||         ||..||||.|||           |
BPUM_0010___y    745 CAATTAGC-----TGAA---------ACATTACAGGAAACGTTACAGGTG    780

BSNT_00058___   1070 AAGGACGAATCAAACGCCGTCAGGCAGAAGAA-GAGCTCA--TG------   1110
                     ||.|| |.||..|| |||         ||||| |.|||||  ||      
BPUM_0010___y    781 AAAGA-GCATGGAA-GCC---------AAGAACGGGCTCAATTGAAAAAC    819

BSNT_00058___   1111 ---ATG-ATGGAAGGC-GACCTGAA----GCAAAAGCTGCTTACAATAAA   1151
                        ||| |||  |||| ||.|.|.|    |||||       |.|||||||
BPUM_0010___y    820 AGTATGTATG--AGGCAGAGCAGCAGTTGGCAAA-------TCCAATAAA    860

BSNT_00058___   1152 GGAAAGATAG   1161
                     ||||.||   
BPUM_0010___y    861 GGAATGA---    867


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