Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00066 and BPUM_0017

See Amino acid alignment / Visit BSNT_00066 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:59
# Commandline: needle
#    -asequence dna-align/BSNT_00066___yabA.1.24716.seq
#    -bsequence dna-align/BPUM_0017___yabA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00066___yabA-BPUM_0017___yabA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00066___yabA-BPUM_0017___yabA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00066___yabA
# 2: BPUM_0017___yabA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 371
# Identity:     265/371 (71.4%)
# Similarity:   265/371 (71.4%)
# Gaps:          28/371 ( 7.5%)
# Score: 923.5
# 
#
#=======================================

BSNT_00066___      1 TTGGATAAAAAAGAGTTATTTGATACAGTCATTAACTTAGAAGAACAAAT     50
                     |||||||||||.||..||||||||||.||.||.||.||||||||||||||
BPUM_0017___y      1 TTGGATAAAAAGGAACTATTTGATACGGTAATCAATTTAGAAGAACAAAT     50

BSNT_00066___     51 TGGCTCACTGTACCGGCAGCTGGGGGATTTGAAGCAGCATATCGGTGAGA    100
                     .||.||.||.||.||.|||.|.||.||||||||..|.|||||||||||..
BPUM_0017___y     51 CGGTTCTCTTTATCGCCAGTTAGGTGATTTGAAAAATCATATCGGTGAAG    100

BSNT_00066___    101 TGATTGAGGAAAATCATCATTTACAGCTTGAAAACAAGCATTTGCGCAAA    150
                     |||||||.|||||||||||..|.|||.|.||.||..||||.|||||..||
BPUM_0017___y    101 TGATTGAAGAAAATCATCAGCTGCAGATGGAGAATCAGCACTTGCGTGAA    150

BSNT_00066___    151 CGGCTGGACGATACGACGCAG-CAGATTGAAAAGTTCAAA---GCTGATA    196
                     ||.|||||         .||| |.|||.|    |..||||   .||||.|
BPUM_0017___y    151 CGTCTGGA---------TCAGTCCGATCG----GGACAAATCGTCTGAGA    187

BSNT_00066___    197 ---AAAAAGAATCAAAAACACAGAAGACGGAGCAAACTGATATAGGGGAA    243
                        |.||.||.||   ..|.||||||.|.|..||..||||||||||.|||
BPUM_0017___y    188 CAGAGAATGATTC---TGCTCAGAAGCCAGGTCATTCTGATATAGGAGAA    234

BSNT_00066___    244 GGATATGATAATCTGGCACGTCTGTATCAAGAAGGATTTCATATCTGCAA    293
                     ||..|||||||.||.||.||..|.|||||.||.||.||.|||||.|||||
BPUM_0017___y    235 GGTCATGATAACCTAGCTCGGTTATATCAGGAGGGCTTCCATATTTGCAA    284

BSNT_00066___    294 TGTCCACTATGGAAGTGTTCGAAAAGAG---GATTGTCTTTTCTGTCTGT    340
                     |||.||.|||||.||..|.||.||||||   ||.|||.|.||||||||||
BPUM_0017___y    285 TGTACATTATGGGAGCATACGTAAAGAGGGAGACTGTTTGTTCTGTCTGT    334

BSNT_00066___    341 CATTCTTAAATAAAAAATAG-    360
                     ||||.||||||||||||| | 
BPUM_0017___y    335 CATTTTTAAATAAAAAAT-GA    354


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