Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00078 and BPUM_0026
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:00
# Commandline: needle
# -asequence dna-align/BSNT_00078___ksgA.1.24716.seq
# -bsequence dna-align/BPUM_0026___ksgA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00078___ksgA-BPUM_0026___ksgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00078___ksgA-BPUM_0026___ksgA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00078___ksgA
# 2: BPUM_0026___ksgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 895
# Identity: 666/895 (74.4%)
# Similarity: 666/895 (74.4%)
# Gaps: 32/895 ( 3.6%)
# Score: 2440.5
#
#
#=======================================
BSNT_00078___ 1 ATGAATAAAGATATTGCGACACCGATTAGAACGAAAGAGATACTGAAGAA 50
||||||||||||||.||||||||.||.||||||||.||.|||||||||||
BPUM_0026___k 1 ATGAATAAAGATATAGCGACACCCATCAGAACGAAGGAAATACTGAAGAA 50
BSNT_00078___ 51 ATACGGTTTTTCTTTTAAAAAGAGCTTAGGACAGAATTTCTTAATTGATA 100
|||||||||.|||||||||||||||||.||.|||||.||.||||||||||
BPUM_0026___k 51 ATACGGTTTCTCTTTTAAAAAGAGCTTGGGCCAGAACTTTTTAATTGATA 100
BSNT_00078___ 101 CGAACATTTTAAACAGAATTGTTGATCACGCGGAAGTGACGGAGAAAACA 150
|.||.||..|..|..|.|||||.||||||||.||.|||||.||..|.||.
BPUM_0026___k 101 CAAATATACTCGATCGTATTGTCGATCACGCAGAGGTGACAGATGAGACT 150
BSNT_00078___ 151 GGTGTCATTGAAATCGGCCCGGGAATCGGGGCTTTAACCGAACAGCTTGC 200
||.||.|||||.||.||.||.||.|||||.||.||.|||||.|||||.||
BPUM_0026___k 151 GGCGTAATTGAGATTGGGCCTGGTATCGGTGCATTGACCGAGCAGCTCGC 200
BSNT_00078___ 201 CAAGCGGGCGAAAAAGGTCGTGGCATTTGAGATTGACCAGCGATTATTGC 250
.|||||.||.||.||||||...||.|||||.||.||.|||||.|||.|||
BPUM_0026___k 201 TAAGCGTGCAAAGAAGGTCACCGCTTTTGAAATCGATCAGCGTTTACTGC 250
BSNT_00078___ 251 CGATTCTGAAGGATACACTGTCACCTTACGAAAATGTCACTGTCATTCAT 300
|.|||.|.||.|||||.||.||.||.||.||.|||||.||..||||||||
BPUM_0026___k 251 CTATTTTAAACGATACGCTTTCTCCATATGATAATGTGACGATCATTCAT 300
BSNT_00078___ 301 CAGGACGTGTTAAAGGCTGATGT--CAAATCAGTCATTGAAGAACAATTT 348
||.||.||.||||||||.||||| .||| ||||||.||.|||.|.|||
BPUM_0026___k 301 CAAGATGTATTAAAGGCAGATGTGGGAAA--AGTCATCGAGGAAAATTTT 348
BSNT_00078___ 349 CAAGATTGTGATGAGATCATGGTAGTTGCCAACCTTCCTTATTACGTAAC 398
...||||||.|.||..|.|||||.||.|||||||||||.||||||||.||
BPUM_0026___k 349 GCTGATTGTAAAGAAGTGATGGTGGTCGCCAACCTTCCATATTACGTGAC 398
BSNT_00078___ 399 AACACCGATTATCATGAAACTGCTTGAAGAACATCTTCCGCTGAAAGGGA 448
.|||||||||||.|||||.||||||||||||.|.|||||..|||||||||
BPUM_0026___k 399 GACACCGATTATTATGAAGCTGCTTGAAGAAAACCTTCCATTGAAAGGGA 448
BSNT_00078___ 449 TTGTGGTTATGCTGCAAAAAGAAGTGGCTGAGCGCATGGCGGCTGATCCT 498
|||||||.|||||||||||||||||.||.||.||.|||||.|||..||||
BPUM_0026___k 449 TTGTGGTCATGCTGCAAAAAGAAGTAGCAGATCGTATGGCCGCTATTCCT 498
BSNT_00078___ 499 TCATCTAAGGAATACGGCTCGCTTTCAATCGCGGTGCAGTTTTATACAGA 548
|||||.|||||||||...||||||||.|||||.||.||.|..||||||||
BPUM_0026___k 499 TCATCAAAGGAATACAATTCGCTTTCTATCGCAGTTCAATACTATACAGA 548
BSNT_00078___ 549 AGCCAAAACGGTGATGATCGTCCCGAAAACCGTATTTGTTCCTCAGCCTA 598
|||.|||||.||||||.|.||.||.|||||.||.||.|||||.|||||.|
BPUM_0026___k 549 AGCGAAAACAGTGATGGTTGTGCCTAAAACGGTTTTCGTTCCACAGCCAA 598
BSNT_00078___ 599 ATGTCGATTCCGCAGT------------CATTCGTCTGATTCTCCGAGAC 636
||||||||||.||.|| |.||||| ||.||
BPUM_0026___k 599 ATGTCGATTCGGCTGTGATCAAGTTGACCGTTCGT----------GAAAC 638
BSNT_00078___ 637 GGCCCGGCAGTGGACGTGGAAAACGAATCCTTTTTCTTTCAGCTCATCAA 686
| ||.||.||....||.|||||.||....|||||||||||..|.||...
BPUM_0026___k 639 G--CCTGCCGTATCAGTAGAAAATGATGAATTTTTCTTTCAATTGATTCG 686
BSNT_00078___ 687 GGCAAGCTTTGCACAGCGCCGTAAAACGCTGCTCAATAACTTAGTTAACA 736
.||.|||||||..||||||||.|||||..||.|.||||||.|..|.||||
BPUM_0026___k 687 TGCGAGCTTTGGTCAGCGCCGGAAAACATTGATGAATAACCTCATGAACA 736
BSNT_00078___ 737 ATCTGCCTGAAGGAAAAGC-ACAAAAATCAACGATTGAACAAGTGCTCGA 785
|..|.|||||.|| ||||| |||.|||.|.|..||||||.|||..||..|
BPUM_0026___k 737 ACTTACCTGATGG-AAAGCAACATAAAGCGATCATTGAAGAAGCACTTCA 785
BSNT_00078___ 786 AGAAACAAATATTGACGGTAAGCGCCGAGGTGAATCCCTGTCTATTGAGG 835
|..|.||.|.|||||.|||||||||||.||.||.||..|.||.|||||.|
BPUM_0026___k 786 AACAGCAGACATTGATGGTAAGCGCCGCGGCGAGTCATTATCCATTGAAG 835
BSNT_00078___ 836 AATTCGCAGCG-CTGTCTAACGGATTGTATAAAGCCCTTTTCTAA 879
||||.|| .|| .||||.||.|..||..|.||||||||.||.|||
BPUM_0026___k 836 AATTTGC-CCGTTTGTCGAATGTTTTACAAAAAGCCCTGTTTTAA 879
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