Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00088 and BPUM_0035
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:01
# Commandline: needle
# -asequence dna-align/BSNT_00088___prs.1.24716.seq
# -bsequence dna-align/BPUM_0035___prs.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00088___prs-BPUM_0035___prs.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00088___prs-BPUM_0035___prs.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00088___prs
# 2: BPUM_0035___prs
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 963
# Identity: 755/963 (78.4%)
# Similarity: 755/963 (78.4%)
# Gaps: 18/963 ( 1.9%)
# Score: 2892.0
#
#
#=======================================
BSNT_00088___ 1 ATGTCTAATCAATACGGAGATAAGAATTTAAAGATTTTTTCTTTGAATTC 50
||||||||||..||.|..|||..||||||||||||.||.|||||||||||
BPUM_0035___p 1 ATGTCTAATCGTTATGCTGATGCGAATTTAAAGATCTTCTCTTTGAATTC 50
BSNT_00088___ 51 GAATCCAGAGCTTGCAAAAGAAATCGCAGAT-ATAGTTGGAGTTCAATTA 99
.||.||.||.|||||.||||||||.||.||| .|| |.||||||.|..||
BPUM_0035___p 51 AAACCCTGAACTTGCTAAAGAAATTGCCGATCGTA-TCGGAGTTGATGTA 99
BSNT_00088___ 100 GGGAAATGTTCTGTCACAAGATTTAGTGACGGGGAAGTCCAAATTAATAT 149
||.||..|.|||||.|.|.|.|||||||||||.|||||||||||.|||||
BPUM_0035___p 100 GGAAAGAGCTCTGTTAAACGCTTTAGTGACGGTGAAGTCCAAATCAATAT 149
BSNT_00088___ 150 CGAAGAAAGTATTCGCGGATGTGATTGTTACATCATCCAGTCTACAAGTG 199
.|||||||||||.|||||.|||||||||||..||||.||.||.||.||||
BPUM_0035___p 150 TGAAGAAAGTATCCGCGGGTGTGATTGTTATGTCATTCAATCCACTAGTG 199
BSNT_00088___ 200 ACCCCGTTAACGAGCATATTATGGAACTGCTGATTATGGTAGATGCGTTA 249
..||.||.||.|||||.||||||||.|||||.||||||||||||||..||
BPUM_0035___p 200 CGCCAGTGAATGAGCACATTATGGAGCTGCTTATTATGGTAGATGCACTA 249
BSNT_00088___ 250 AAACGCGCTTCTGCAAAAACGATTAACATTGTTATTCCTTATTACGGTTA 299
||||||||||||||.||||||.|.||.|||||.||.|||||||||||.||
BPUM_0035___p 250 AAACGCGCTTCTGCGAAAACGGTCAATATTGTGATCCCTTATTACGGATA 299
BSNT_00088___ 300 TGCGCGTCAAGACAGAAAAGCAAGATCCCGTGAGCCAATCACAGCTAAAC 349
|||.||||||||..|.||.||||.|.|.||||||||||||||.||.||.|
BPUM_0035___p 300 TGCACGTCAAGATCGTAAGGCAAAACCTCGTGAGCCAATCACTGCGAAGC 349
BSNT_00088___ 350 TTTTCGCTAACCTGCTTGAAACAGCCGGTGCGACTCGTGTGATTGCACTT 399
|.||.||.|||.|.|||||||||||.|||||.||.|||||.|||||||||
BPUM_0035___p 350 TATTTGCGAACTTACTTGAAACAGCAGGTGCTACACGTGTCATTGCACTT 399
BSNT_00088___ 400 GACCTGCATGCGCCGCAAATTCAAGGATTCTTTGATATACCGATTGACCA 449
||.||.||||||||||||||.|||||.|||||||||||.||.||.||..|
BPUM_0035___p 400 GATCTTCATGCGCCGCAAATCCAAGGTTTCTTTGATATTCCAATCGATAA 449
BSNT_00088___ 450 CTTAATGGGTGTTCCGATTTTAGGAGAATATTTTGAAGGCA-AAAATCTT 498
||||||||.|||.||.||.|||..|.|.|||||.||| || ||||.|||
BPUM_0035___p 450 CTTAATGGCTGTGCCAATCTTAACAAACTATTTCGAA--CAGAAAAACTT 497
BSNT_00088___ 499 GAA-GATATCGTCATTGTTTCACCAGACCATGGCGGTGTGACACGTGCCC 547
||| |||||||||.||||.||.||.|||||.||.||||||||||||||.|
BPUM_0035___p 498 GAATGATATCGTCGTTGTGTCTCCTGACCACGGTGGTGTGACACGTGCGC 547
BSNT_00088___ 548 GCAAACTGGCTGACCGACTAAAAGCGCCAATTGCGATTATCGATAAACGC 597
|.|||.||||.||.||.||.|||||.|||||.||.||||||||.|||||.
BPUM_0035___p 548 GTAAAATGGCAGATCGTCTGAAAGCACCAATCGCTATTATCGACAAACGT 597
BSNT_00088___ 598 CGTCCGCGTCCAAACGTGGCGGAAGTCATGAATATTGTAGGTAACATCGA 647
|||||....||||||||.||.|||||||||||.||..|.||||||||.||
BPUM_0035___p 598 CGTCCAAAGCCAAACGTTGCTGAAGTCATGAACATCATTGGTAACATTGA 647
BSNT_00088___ 648 AGGGAAGACTGCTATCCTCATCGATGACATTATTGATACTGCAGGTACGA 697
|||.||.||.||.||.|||||||||||.|||||||||||.||.|||||.|
BPUM_0035___p 648 AGGCAAAACGGCGATTCTCATCGATGATATTATTGATACAGCTGGTACTA 697
BSNT_00088___ 698 TTACACTTGCTGCTAATGCGCTCGTTGAAAACGGAGCGAAAGAAGTATAT 747
|||||||||||||.|||||.||.||.|||||.|||||....|||||.|||
BPUM_0035___p 698 TTACACTTGCTGCAAATGCACTTGTGGAAAATGGAGCAGCTGAAGTCTAT 747
BSNT_00088___ 748 GCATGCTGTACACACCCTGTACTATCAGGCCCTGCGGTAGAACGGATTAA 797
||.||||||||.|||||.|||.|.||.||.||.||.||||||||.||.|.
BPUM_0035___p 748 GCTTGCTGTACTCACCCAGTATTGTCTGGACCAGCAGTAGAACGTATCAC 797
BSNT_00088___ 798 TAATTCAACAATTAAAGAGCTTGTTGTGACAAACAGCA-TCAAGCTT-CC 845
.||.||.|.|||||||||..|.||||||||||||||.| ||| ||| .|
BPUM_0035___p 798 AAACTCTAAAATTAAAGAATTAGTTGTGACAAACAGTATTCA--CTTAAC 845
BSNT_00088___ 846 CGAAGAAAAGAAAATTG---AACGCTTTAGGCAGCTTTCAGTCGGACCGC 892
.||.||.||||||.||| || ||.|..|.|||||||||.||.||..
BPUM_0035___p 846 AGATGACAAGAAAGTTGGGAAA---TTCATTCCGCTTTCAGTTGGGCCTT 892
BSNT_00088___ 893 TTCTGGCAGAAGCAATTATTCGCGTTCATG-AGCAGCAATCAGTCAGCTA 941
|.||.||||||||.||.||.||.||.|||| ||.|| ||||.||.|||||
BPUM_0035___p 893 TGCTTGCAGAAGCCATCATCCGTGTACATGAAGAAG-AATCTGTGAGCTA 941
BSNT_00088___ 942 TCTGTTCAGCTAA 954
.||.||.||||||
BPUM_0035___p 942 CCTTTTTAGCTAA 954
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