Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00090 and BPUM_0036

See Amino acid alignment / Visit BSNT_00090 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:01
# Commandline: needle
#    -asequence dna-align/BSNT_00090___ctc.1.24716.seq
#    -bsequence dna-align/BPUM_0036___ctc.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00090___ctc-BPUM_0036___ctc.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00090___ctc-BPUM_0036___ctc.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00090___ctc
# 2: BPUM_0036___ctc
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity:     425/653 (65.1%)
# Similarity:   425/653 (65.1%)
# Gaps:          64/653 ( 9.8%)
# Score: 1247.0
# 
#
#=======================================

BSNT_00090___      1 ATGGCAACTTTAACGGCAAAAGAAAGAACGGACTTTACTCGTTCGTCTCT     50
                     |||||||||||||..|||||..|||||||.||.||.|..|||||..|.||
BPUM_0036___c      1 ATGGCAACTTTAAAAGCAAATAAAAGAACTGATTTCAAACGTTCCACACT     50

BSNT_00090___     51 TCGGAATATCCGTACTTCAGGACATGTTCCAGGTATCATATATGGGAAGG    100
                     .|..||.||||||..|||||||||.|||||.|||.|||||||.||.||..
BPUM_0036___c     51 GCAAAAAATCCGTCATTCAGGACACGTTCCTGGTGTCATATACGGAAAAA    100

BSNT_00090___    101 ATACGGGTAACAAAC---CTGTGTCATTAGACAGTGTGGAGCTCATCAAA    147
                     ||||.|   ||||.|   ||||.|||.|||||||..|.|| .|.||.|||
BPUM_0036___c    101 ATACAG---ACAACCTGGCTGTTTCACTAGACAGCATCGA-TTTATTAAA    146

BSNT_00090___    148 -ACGCTGA-GGGACGAAGGCAAAAATGCAGTCATTACGCTTGAGGTCAGC    195
                      || ||.| |.||.|||||.||.|||.||.||||.||..|.||.||.|.|
BPUM_0036___c    147 GAC-CTTACGTGATGAAGGGAAGAATACAATCATCACATTGGACGTGAAC    195

BSNT_00090___    196 GGAGAAAAACACTCAGTCATGGTAACAGACCTGCAGACGGACCCGCTGAA    245
                     ||.||||.|.|.||.||.|||||.|||||..|.||.||.||||||||.||
BPUM_0036___c    196 GGTGAAACAAAATCCGTGATGGTCACAGAATTACAAACAGACCCGCTAAA    245

BSNT_00090___    246 AAATGAAATCACT----CATGCTGATTTTCAAGTAGTTAATATG-AGTGA    290
                     ||||||    .||    |||||.||.||.|||||.||..||.|| ||.| 
BPUM_0036___c    246 AAATGA----GCTTGTCCATGCAGACTTCCAAGTGGTCGATTTGCAGCG-    290

BSNT_00090___    291 GGACATTGAAGTGGAAGTTCCGATTCATCTGACCGGAGAAGCCATTGGAG    340
                     .||.|||||||.|||.||.||..||||..|||..||.|||.|.|..||||
BPUM_0036___c    291 TGAAATTGAAGCGGATGTACCTGTTCAGTTGATTGGCGAATCTAAAGGAG    340

BSNT_00090___    341 TGAAAAACGGAGGCGTACTGCAGCAGCCGTTATATGCACTTACTGTAAAG    390
                     |.|||.|.||.||.||.||.||||||||..|||.||.|||..|..|.|..
BPUM_0036___c    341 TTAAAGATGGCGGTGTGCTTCAGCAGCCACTATTTGAACTATCCATCACA    390

BSNT_00090___    391 GCCAAGCCAAAAGCCATTCCGCAAACGATTGAGGCTGATATTTCAAGCCT    440
                     ||.||.|||||||..||.||.||....||.||.||.||||||.|||.|.|
BPUM_0036___c    391 GCGAAACCAAAAGATATCCCACAGCATATAGAAGCAGATATTACAAACTT    440

BSNT_00090___    441 CGATGTAAATGAAGTACTGACGATTGCGGATTTGCCTGCTGGCGGTGACT    490
                     .||.||.|||||.||.||.||..|.||.||||||||||.|  |.||.|  
BPUM_0036___c    441 AGAAGTGAATGATGTCCTAACAGTCGCTGATTTGCCTGTT--CAGTCA--    486

BSNT_00090___    491 ACTCCT------TTAATCATGAGTCAGATGAGGTTGTGGCTTCAATCCTT    534
                       ||.|      |.|||.|.||..||||.||.||.|||||.||.||..|.
BPUM_0036___c    487 --TCATATCAAGTGAATAACGATCCAGAAGAAGTCGTGGCATCCATTTTA    534

BSNT_00090___    535 CCTCCGCAGCAGCAGGAAGCAG------CTGAGGTCGAT---GAAGAGGA    575
                     ||.||.||||      ||.|||      ||||....|||   ||||||||
BPUM_0036___c    535 CCGCCTCAGC------AATCAGAGGTTCCTGAACCAGATAGCGAAGAGGA    578

BSNT_00090___    576 ATCTGCC----GATGCTCAGCC------AGAAGGTGAAAACGA---ACAA    612
                     |    ||    ||..||.||.|      ||||...||.|||||   |.||
BPUM_0036___c    579 A----CCAAAAGAACCTGAGGCTATTAAAGAAAAGGATAACGATGGAGAA    624

BSNT_00090___    613 TAA    615
                     |||
BPUM_0036___c    625 TAA    627


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