Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00096 and BPUM_0041
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:02
# Commandline: needle
# -asequence dna-align/BSNT_00096___yabM.1.24716.seq
# -bsequence dna-align/BPUM_0041___yabM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00096___yabM-BPUM_0041___yabM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00096___yabM-BPUM_0041___yabM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00096___yabM
# 2: BPUM_0041___yabM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1787
# Identity: 1026/1787 (57.4%)
# Similarity: 1026/1787 (57.4%)
# Gaps: 370/1787 (20.7%)
# Score: 2453.5
#
#
#=======================================
BSNT_00096___ 1 ATGGACGATTCAATAGGCGTTAAA----CGGCATTGGATTTGGCAGGGGG 46
||..||.|.||..|||| |.|||||||.|||..|||||.|
BPUM_0041___y 1 -------ATGAAAAATGCTGTAAATCAGCCGCATTGGCTTTTCCAGGGTG 43
BSNT_00096___ 47 CTTTTGTTTTAATTCTGGCAGGC--GTCATCACAAAAATTTTAAGCGCTG 94
|..|..||||.|...|.|||||| ||.|| ||||..|..||||.||.|
BPUM_0041___y 44 CGGTGATTTTGACCATCGCAGGCTTGTTAT--CAAAGGTACTAAGTGCCG 91
BSNT_00096___ 95 TTTACAGAGTCCCGTTTCAAAACATTGTCGGCGATGTTGGATTTTATATA 144
||||..|.||.|||||.||.|||||.||.||.||...|||.||||||||.
BPUM_0041___y 92 TTTATCGTGTTCCGTTCCAGAACATCGTAGGAGACACTGGGTTTTATATT 141
BSNT_00096___ 145 TATCAGCAGGTATATCCCTTT-CTTGGTATTGCGGTCATGCTGTCCACAT 193
||||||||.||.|| |||||| ||||||||||||.|||||||...|||..
BPUM_0041___y 142 TATCAGCAAGTGTA-CCCTTTCCTTGGTATTGCGATCATGCTTGGCACCA 190
BSNT_00096___ 194 CAGGATTTCCAGTCATTATTTCAAAGCTGATGAATGATTATAGTGAAAAA 243
||||.|||||.|||||..|.||.|||||..|||.|||..||.|.|||.|.
BPUM_0041___y 191 CAGGGTTTCCTGTCATGGTGTCCAAGCTTTTGAGTGAACATGGGGAAGAG 240
BSNT_00096___ 244 AATC-----ATCACACCATATTAAAA--ATATCAGCGTTGTTTTTGTCTT 286
|||| ||| ||||.|| .|||| .||.||||.
BPUM_0041___y 241 AATCGACGGATC-------ATTACAAGGGTATC--------CTTGGTCTA 275
BSNT_00096___ 287 TAATCGGTATTTTA------------TTATTTCTTTGTTTATATCTGGGT 324
| ||| |.|||| ||.|||||||||.|.||..|.||.
BPUM_0041___y 276 T-ATC---ACTTTACTGAGCCTGGTCTTGTTTCTTTGTCTTTACATAGGA 321
BSNT_00096___ 325 GCTGTTCCTATTGCACTCTTTATGGGGGATTCGCA-TCTAGCCGTGTTAA 373
||.|.|...|||||...|.||||||.||| || ||.| ||||
BPUM_0041___y 322 GCAGGTAGAATTGCGAGCCTTATGGCGGA----CAGTCAA------TTAA 361
BSNT_00096___ 374 T-----TCAAGTGGCCGCATGCGCGTTTCTGCTGTTCCCATT--TGTCGC 416
| ||| .||..|||.|.|.||.|| ||||.|.||| ||.|||
BPUM_0041___y 362 TTTTGCTCA----TCCAGATGAGTGCTTTTG-TGTTTCTATTTCTGCCGC 406
BSNT_00096___ 417 -------GTTGCTTAGAGGCGGTTTTC--AGGGGCGGCACGAAATGCTCC 457
|.||||.||.||||.||||| ||.|.|||.|.| |||||.|
BPUM_0041___y 407 TCACTGTGATGCTGAGGGGCGTTTTTCAGAGTGACGGTATG--ATGCTTC 454
BSNT_00096___ 458 CTTCAGCCTTATCAC----AGATGA---------CAGAGCAG--TTTCTG 492
|..|.||..|.||.| ||.||| |||.|.|| .|||||
BPUM_0041___y 455 CAACGGCTGTTTCTCAATTAGTTGAGCAGCTCATCAGGGTAGGCGTTCTG 504
BSNT_00096___ 493 CGTGTTGCGGTGCTCTTGGGTTTATCATTTTGGCTCGTGAAAAAGGGAGC 542
|.||| ||||||.||||...||||||.|.|.||...
BPUM_0041___y 505 CTTGT---------------TTTATCCTTTTATTTCGTGAGACACGGCTA 539
BSNT_00096___ 543 CTCGCTTTATACTGCGGGAGCGGCAGCCG-CTTCAGGCTCTCTTGCTGGA 591
.|||||||||....|.|||||||..||.| |||| ..|||..|.||.|||
BPUM_0041___y 540 TTCGCTTTATGAAACAGGAGCGGGCGCGGTCTTC-TCCTCCATAGCCGGA 588
BSNT_00096___ 592 AGTTTGGTTGCATTGGTGATACTGGGGGTTT---TTTGGTTCA--AAACG 636
||| |..||.|.|.|.||.|||....||| |||||.||| .|.||
BPUM_0041___y 589 AGT---GCGGCCTCGCTTATCCTGCTTCTTTTTCTTTGGCTCACTTACCG 635
BSNT_00096___ 637 AAAAGAG-----AAAACCAAACGGATAGGCA---AAACGAAAATGTCATC 678
||||.|| ...|||.| .||.||.|| |.|||| |
BPUM_0041___y 636 AAAACAGTCTTCTGCACCTA--TGACAGTCAAGCAGACGA---------C 674
BSNT_00096___ 679 ACAAC---AAAAGAA----TTGACGAAAAA-------ACTGCTTTTATAT 714
||..| |||||.| ||| ||.| |||| |.||.||
BPUM_0041___y 675 ACTTCGGAAAAAGGATGTTTTG----AAGAGTTTGGTACTG--TATACAT 718
BSNT_00096___ 715 TCGGTTACAATTTGTGTAAGCAGTTTGCTGCTTTTGTTTATCCAGCTTGT 764
|| ||.||||||||.|||.|..|.||..||||.|..||.||..|..|
BPUM_0041___y 719 TC----ACGATTTGTGTCAGCGGACTACTCATTTTATGGATGCAAATGAT 764
BSNT_00096___ 765 TGATGCTTTGAATTTATATGCATTGCTTTCAGGTGGTGAGGCA---AGCG 811
||||||.||..||.|.|||||..|||| |.|..||||||.| ||.|
BPUM_0041___y 765 TGATGCCTTTCATCTGTATGCGCTGCT---ACGCAGTGAGGGACTGAGTG 811
BSNT_00096___ 812 AAGAAGC----AAAACGCCTGAAGGGGATCTATGATCGGGGACAACCGTT 857
|||..|| ||..||.|..||||.| |.|||||.||.||.||.|||||
BPUM_0041___y 812 AAGCCGCGGCAAAGGCGGCAAAAGGTG-TATATGACCGAGGGCAGCCGTT 860
BSNT_00096___ 858 GCTGCAGCTCGGCTCCGTTTTTGCCGTAAGCATTGCGACGTCACTCGTTC 907
..|.|||||.||..|.||.||||||.|.|||||||..||.||.||.||.|
BPUM_0041___y 861 TTTACAGCTGGGGACGGTGTTTGCCATTAGCATTGGAACCTCTCTTGTGC 910
BSNT_00096___ 908 CGTATATTTCTAT-GGCTGTAAAAAACAAAGAG--CTGAAGATCATGAA- 953
| ||||.||| .|||| |.|.||| .||.|||.||||||
BPUM_0041___y 911 C----ATTTTTATCTGCTG-------CCATGAGGAATGGAGAGCATGAAG 949
BSNT_00096___ 954 -----AG--AAAAAATCAC-GTCATC-TTTGAAACTATGCCTT--GTGCT 992
|| |||||.| || |.|||| .||.|.|||| |.| ||..|
BPUM_0041___y 950 CGATCAGGCAAAAAGT-ACGGACATCGATTAAGACTA---CATCGGTTTT 995
BSNT_00096___ 993 CGGTACAGGCGCATCGGTTGGGTTGATTTGCATTCTAAAGCCGGTAAATA 1042
.||.|..||..||.|.||||||.|||||||.|||||...|.|.||.||.|
BPUM_0041___y 996 AGGGATTGGTTCAGCAGTTGGGCTGATTTGTATTCTTTCGTCAGTCAACA 1045
BSNT_00096___ 1043 TCATGCTGTTTCAAAATGGAGAAGGGACAGGTGCGTTACAAGTATTTAGC 1092
|||||||.||||..||||....|||.||.|.||||.|.|||.|||| |
BPUM_0041___y 1046 TCATGCTTTTTCGTAATGATTTAGGTACCGATGCGCTGCAAATATT---C 1092
BSNT_00096___ 1093 TG---TTCCATTTTGTTTGCATCTATGGCGGTAACGGCAGCGGCAGT-CT 1138
|| ||||||....|||.|.||.||.|||.|.|||..|||.||..| ||
BPUM_0041___y 1093 TGTATTTCCATCGCATTTACTTCGATTGCGATTACGCAAGCAGCTTTACT 1142
BSNT_00096___ 1139 TACAGGGAGCGGGGTACACAGTTTTTCCTGCGATAGCGGTGGGCGC---- 1184
| ||.||....|||.|.||.||.|.|||.||..|.|.||| ||
BPUM_0041___y 1143 T-CAAGGTCTCGGGCATACTGTGTATCCGGCTGTTGTGGT----GCTTCT 1187
BSNT_00096___ 1185 GGGTGTTGCGGTGAAATGGGTGTTAAATA----------CACTTTTGGTT 1224
..||||...|||||||||| ||| |||||.||
BPUM_0041___y 1188 CAGTGTACTGGTGAAATGG-------ATACTCACGCTTGCACTTGTG--- 1227
BSNT_00096___ 1225 CCGCGCTAT--GGGATTGAAGGCGCATCGCTTGCGACA------------ 1260
.|||||| ||.||..|.|| ||||.||
BPUM_0041___y 1228 --CCGCTATTAGGCATCTACGG---------TGCGGCATGGTCAACTGTG 1266
BSNT_00096___ 1261 -GCGGCTTCCTTTGCGGCTGTCGC-CGGCCTTAA---CTTGTATCAGCTT 1305
||||.||||| .||||.||| |.| ||.|| |||.||| ||
BPUM_0041___y 1267 TGCGGTTTCCT----CGCTGCCGCTCTG-CTCAATGCCTTTTAT----TT 1307
BSNT_00096___ 1306 -CGGCA-AAAGGAATGGCTT--GATAAGCTTAGAGGCGTT----TTGATT 1347
.|||| ||||| ||||.|| |.|.|| ||||..||| .|||
BPUM_0041___y 1308 GAGGCACAAAGG-ATGGATTTCGTTGAG---AGAGCTGTTCCCAGTGA-- 1351
BSNT_00096___ 1348 CCG-ATTATTGGATCTGCTCTTTTGAT-GTCAGCTGTCTTGCTTGCGTAT 1395
| |||.||..|||.||...|||.|| |.||.| |||||..|.|.||||
BPUM_0041___y 1352 --GAATTCTTTTATCGGCCGCTTTCATGGCCATC-GTCTTAATAGGGTAT 1398
BSNT_00096___ 1396 -ACGCGTCTATGGAC---TTTCTTG-----TTTCC--TGCAACAGGAAGA 1434
|.|| || ||||||| ||.|| ||.||
BPUM_0041___y 1399 CAGGC--------ACTGTTTTCTTGGGTCATTCCCTTTGAAA-------- 1432
BSNT_00096___ 1435 GGAGCG-------GCTGTGATTGAGAGCCTTTCTGCTGTTGCCATTGGTG 1477
|.|| .|.||..|.||||||||..|..|.|||...|||||||
BPUM_0041___y 1433 --AACGTCCTTTTTCCGTTTTAGAGAGCCTGACGTCAGTTTTTATTGGTG 1480
BSNT_00096___ 1478 G---CGCGGTGTTTATTTATTGTATGATGAGATTGGGAATATTTACAGAT 1524
| ||| .|||.|.|||.||||..|.|...|.|.|.|||||||.||.
BPUM_0041___y 1481 GTTTCGC---CTTTTTATATAGTATTCTTAAGCTAGAAGTATTTACGGAC 1527
BSNT_00096___ 1525 GAAGAGCTGAACAGT-GTGCCATTCGGCAGCAA-----------GTTAAG 1562
||.|| .||.|.|.| .|.|||||.|| ||.|| .||||.
BPUM_0041___y 1528 GAGGA-ATGGAGACTCATTCCATTAGG-AGAAAAGATTTTATATTTTAAA 1575
BSNT_00096___ 1563 CAAATTCATGAGAAGGAGAGAACAAAATGGCGGGTAA 1599
|| .||||||.||| |.|||||||||.|||||
BPUM_0041___y 1576 CA----GATGAGAGGGA---ATCAAAATGGCAGGTAA 1605
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