Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00104 and BPUM_0047

See Amino acid alignment / Visit BSNT_00104 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:03
# Commandline: needle
#    -asequence dna-align/BSNT_00104___yabR.1.24716.seq
#    -bsequence dna-align/BPUM_0047___yabR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00104___yabR-BPUM_0047___yabR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00104___yabR-BPUM_0047___yabR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00104___yabR
# 2: BPUM_0047___yabR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 399
# Identity:     335/399 (84.0%)
# Similarity:   335/399 (84.0%)
# Gaps:          12/399 ( 3.0%)
# Score: 1442.0
# 
#
#=======================================

BSNT_00104___      1 ATGTCGATTGAAGTTGGCAGCAAGTTGCAAGGGAAAATTACAGGTATTAC     50
                     ||||||||||||||||||||||||||.|||||||||.||||.||.|||||
BPUM_0047___y      1 ATGTCGATTGAAGTTGGCAGCAAGTTACAAGGGAAAGTTACGGGCATTAC     50

BSNT_00104___     51 AAATTTTGGAGCATTTGTTGAATTGCCTGGAGGCTCAACCGGTCTCGTTC    100
                     ||||||||||||.|||||.||.|||||.||.||.|||||.||||||||||
BPUM_0047___y     51 AAATTTTGGAGCTTTTGTGGAGTTGCCAGGCGGTTCAACTGGTCTCGTTC    100

BSNT_00104___    101 ACATTAGTGAGGTAGCTGATAATTATGTCAAAGACATTAACGACCACTTA    150
                     |.||.|||||||||||.|||||.|||||.|||||.|||||.||.||.|||
BPUM_0047___y    101 ATATCAGTGAGGTAGCCGATAACTATGTAAAAGATATTAATGAGCATTTA    150

BSNT_00104___    151 AAAGTCGGCGACCAAGTTGAAGTGAAAGTCATCAACGTTGAAAAAGACGG    200
                     ||||||||.||.|||||||||||||||||.||.|||||||||||||||||
BPUM_0047___y    151 AAAGTCGGTGAACAAGTTGAAGTGAAAGTGATTAACGTTGAAAAAGACGG    200

BSNT_00104___    201 GAAAATTGGTTTATCTATTAAAAAAGCTAAAGACCGTCC---------GC    241
                     .|||||.||.||.||.|||||||||||.|||||.|||||         .|
BPUM_0047___y    201 TAAAATCGGCTTGTCCATTAAAAAAGCAAAAGATCGTCCTCAACAACAAC    250

BSNT_00104___    242 AAGCCAGACC---TAGAAATGATTTCCGTCCGAAAGAATCTTTTGAACAG    288
                     ||.|.|||||   .||||||||||||||||||||.|||||.|||||.||.
BPUM_0047___y    251 AATCAAGACCAAGCAGAAATGATTTCCGTCCGAAGGAATCGTTTGAGCAA    300

BSNT_00104___    289 AAAATGAATAAGTTTTTAAAAGACAGCGAAGATCGCTTGTCATCTTTAAA    338
                     ||||||||.||.||.||||||||.||.|||||.|||||..||||||||||
BPUM_0047___y    301 AAAATGAACAAATTCTTAAAAGATAGTGAAGACCGCTTAACATCTTTAAA    350

BSNT_00104___    339 ACGCAATACGGAATCAAAACGTGGAGGGCGCGGAGCAAGAAGAGGATAA    387
                     |||.||.|||||||||||||||||.||.|||||||||||||||||.|||
BPUM_0047___y    351 ACGTAACACGGAATCAAAACGTGGGGGACGCGGAGCAAGAAGAGGTTAA    399


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