Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00115 and BPUM_0048
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:03
# Commandline: needle
# -asequence dna-align/BSNT_00115___spoIIE.1.24716.seq
# -bsequence dna-align/BPUM_0048___spoIIE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00115___spoIIE-BPUM_0048___spoIIE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00115___spoIIE-BPUM_0048___spoIIE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00115___spoIIE
# 2: BPUM_0048___spoIIE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2558
# Identity: 1852/2558 (72.4%)
# Similarity: 1852/2558 (72.4%)
# Gaps: 139/2558 ( 5.4%)
# Score: 6528.0
#
#
#=======================================
BSNT_00115___ 1 ATGAGAGGAATGGAAAAAGCAGAAAGAA-----GAGTGAACGGGCCAATG 45
|||||||||..|||||||| ||.|.|||.|| .
BPUM_0048___s 1 ---------ATGGAAAAACTAGAAAGAAGAACTGATTTAACAGG-----A 36
BSNT_00115___ 46 GCGGGACAAGCTTTGGAAAAACTCCAATC-GTTTTTTAACAGGG-GCACG 93
||||| .||.|||| .|||| || .||||| ..|.|
BPUM_0048___s 37 GCGGG------GTTTGAAA-----GAATCAGT------GCAGGGTTAAAG 69
BSNT_00115___ 94 AAG---------CTGGTGACTCATCATTTGCATTCACTGTTTTTCTATAA 134
||| |||.|...|||||||..||||||.||.|||||||||||
BPUM_0048___s 70 AAGATGAAAAACCTGTTTCTTCATCATACGCATTCTCTTTTTTTCTATAA 119
BSNT_00115___ 135 AGGATTCATTTATGTTGTCATCGGATTTTTGCTTGGACGGGCTTTCATAT 184
|||.||.||||||||.||..|.||.|||||..|.|||||.||.||.||||
BPUM_0048___s 120 AGGGTTTATTTATGTCGTTCTAGGCTTTTTATTAGGACGAGCCTTTATAT 169
BSNT_00115___ 185 TATCCGAGGTGCTTCCTTTCGCACTTCCTTTCTTTGGAGCGATGCTTCTA 234
||||.||..|..|.||.||.||.||.|||||||||||..|.|||||.||.
BPUM_0048___s 170 TATCTGAAATCATGCCGTTTGCTCTGCCTTTCTTTGGGTCCATGCTGCTT 219
BSNT_00115___ 235 ATCAGAAGAGACAAAGCGTTTTATGCGGTT--TTG----GCTGTGCTTGC 278
||||.||||||.|| .|..|||| || ||| |||.|.|||||
BPUM_0048___s 220 ATCAAAAGAGATAA----GTCCATGC--TTGCTTGTCTCGCTTTACTTGC 263
BSNT_00115___ 279 AGGTGCGCTGACCATATCTCC----AAAGCACTCATTGCTCATACTGGCG 324
.||.||..||||.|||||.|| ||.|||.|..||| ||...
BPUM_0048___s 264 TGGAGCCATGACGATATCACCTCAAAATGCATTGTTTG-------TGTTT 306
BSNT_00115___ 325 GCATTGCTGGCATTCTTCGTATT--TTCT-------AAAGTGGCTGCCTT 365
||||.|||| .||||.|| |||| ||.||||.|.|.||
BPUM_0048___s 307 GCATCGCTG------ATCGTCTTCCTTCTGATGTCCAAGGTGGTTTCTTT 350
BSNT_00115___ 366 CATTACCGACGATCGTGTTAAAGCGCTCCCGATTGTC-GTGTTCTTCTCC 414
|||.|.|.|.||||..||.|||.|..|.|||.||||| .|||.| |.||.
BPUM_0048___s 351 CATCATCAAAGATCCAGTGAAAACATTGCCGGTTGTCATTGTAC-TGTCA 399
BSNT_00115___ 415 ATGGCTG--CAGCAAGAGCCGGGTTTGTTTATGCC-----CAAAATG--G 455
|| |||| || |.||||..|..|||||||| || |||..|| |
BPUM_0048___s 400 AT-GCTGATCA-CCAGAGGAGCATTTGTTTA--CCTAGAGCAAGGTGCTG 445
BSNT_00115___ 456 CGTATTTACAACCTATGATTATGTAATGGCTATCGTTGAGGCTGGACTAT 505
.|.| ||.|||.|||||.||.|||||....||.|||||.|||||..
BPUM_0048___s 446 TGCA-----AAGCTACGATTACGTTATGGCGGGTGTCGAGGCAGGACTTG 490
BSNT_00115___ 506 CGTTTATCTTAACACTGATTTTCCTTCAGAGCCTTCCGATTTTTACTGTG 555
|.||.||.||.|||||||||||||||||.|||||.|||||||||||.||.
BPUM_0048___s 491 CCTTCATTTTGACACTGATTTTCCTTCAAAGCCTGCCGATTTTTACAGTT 540
BSNT_00115___ 556 AAAAAAGTGAAACAATCATTAAAAATAGAGGAAATCATTTGCTTTATGAT 605
|..|||.|.|||||.||.|||||..|.||.|||||.|||||.||||||||
BPUM_0048___s 541 AGGAAAATCAAACACTCCTTAAAGGTTGAAGAAATTATTTGTTTTATGAT 590
BSNT_00115___ 606 TCTTATTGCCTCTGTTTTAACGGGGCTGGCTGGCTTGTCCTACCAAGGGA 655
|.|.||||||||.||||||||.||.||||||||..|..|.|..|||||.|
BPUM_0048___s 591 TTTAATTGCCTCAGTTTTAACAGGTCTGGCTGGGATCACATTTCAAGGAA 640
BSNT_00115___ 656 TGCAGGCAGAACATATATTGGCTCGTTATGTTGTGTTGAGTTTTTCCTTT 705
||||||||||||||||.|||.|.||.|||||.||.|||||.|||.|||||
BPUM_0048___s 641 TGCAGGCAGAACATATTTTGTCACGATATGTAGTATTGAGCTTTGCCTTT 690
BSNT_00115___ 706 ATTGGCGGAGCAAGCATCGGCTGTACGGTTGGGGTTGTGACCGGCCTGAT 755
|||||.|||||.||.||.||.|||||.|||||.||.|||||.||..|.||
BPUM_0048___s 691 ATTGGAGGAGCGAGTATTGGTTGTACAGTTGGTGTCGTGACTGGATTAAT 740
BSNT_00115___ 756 TCTTGGCTTGGCGAATATCGGAAACCTATATCAAATGAGTCTGCTTGCTT 805
|||.||..|.||.||.|||||||||||.||||||||||||||.|||||.|
BPUM_0048___s 741 TCTCGGTCTCGCTAACATCGGAAACCTTTATCAAATGAGTCTTCTTGCCT 790
BSNT_00115___ 806 TTTCCGGTTTATTGGGCGGTTTGCTGAAGGAAGGGAAAAAAGCGGGTGCA 855
||||.||||||||.||.||.||||||||.||.|||||.|||||.||.|||
BPUM_0048___s 791 TTTCAGGTTTATTAGGGGGATTGCTGAAAGAGGGGAAGAAAGCAGGCGCA 840
BSNT_00115___ 856 GCAATTGGTTTGATCGTTGGATCACTT-CTTATATCTTTATATGGTGAAG 904
||.|||||.||.||.||.||.|| ||| ||.||.||.||.||.||.||||
BPUM_0048___s 841 GCCATTGGCTTAATTGTGGGCTC-CTTACTGATTTCATTGTACGGAGAAG 889
BSNT_00115___ 905 GCTCTGCCGGTCTGATGACAACGCTCTATGAGTCATTAATCGCAGTCGGC 954
|.||.||.||.||.||||..|||||.|||||.||..|.||.||.||.|..
BPUM_0048___s 890 GATCAGCAGGACTCATGAACACGCTATATGAATCGCTGATTGCGGTTGTG 939
BSNT_00115___ 955 CTGTTTTTGCTCACACCTCAATCTATTACGAGGAAAGTGGCGAGATATAT 1004
||.||.||||||||.||.|||||..|.||....||.||.||||.||||||
BPUM_0048___s 940 CTCTTCTTGCTCACGCCACAATCCGTAACCTCTAAGGTAGCGAAATATAT 989
BSNT_00115___ 1005 TCCGGGAACTGTCGAGCATCTTCAAGAGCAACAGCAATACGCTAGAAAAA 1054
|||.||.||.||.||||||.|.||.|||||.|||||||||||..|.|||.
BPUM_0048___s 990 TCCTGGTACGGTAGAGCATGTACAGGAGCAGCAGCAATACGCCCGGAAAG 1039
BSNT_00115___ 1055 TCCGTGATGTCACTGCTCAGAAGGTAGACCAATTCTCCAATGTATTTCAC 1104
|.||.|||||.||.||..|.||||||||||||||.||.|||||||||||.
BPUM_0048___s 1040 TACGAGATGTGACAGCAAAAAAGGTAGACCAATTTTCTAATGTATTTCAT 1089
BSNT_00115___ 1105 GCGCTGTCTGAAAGCTTTGCAACCTTTTATCAA-GCAT--CAGACGAACA 1151
|||||||||||.||.|||||.||.|||||..|| .||| |.||.|||.|
BPUM_0048___s 1090 GCGCTGTCTGAGAGTTTTGCGACATTTTACGAATCCATTCCTGAAGAAAA 1139
BSNT_00115___ 1152 GACAGATGACAG-CGAAGTTGATCTGTTCTTAAGCAAAATCACGGAGCAT 1200
||.|.|.|| || .||.||.|||||.||.|||||.|..|||||.||.|..
BPUM_0048___s 1140 GAAACAGGA-AGAGGATGTAGATCTTTTTTTAAGTACGATCACAGAACGA 1188
BSNT_00115___ 1201 TCCTGCCAGACGTGCTACAAGAAAAACAGGTGCTGGGTACAGAACTTTGA 1250
|||||.||.||||||||.||||||||.|..||||||||.|||||||||||
BPUM_0048___s 1189 TCCTGTCAAACGTGCTATAAGAAAAATAAATGCTGGGTGCAGAACTTTGA 1238
BSNT_00115___ 1251 TAAAACATATGACTTAATGAAACAAGTTATGCTTGAAACAGAGGAAAAA- 1299
||.|||.|||||..|.||||||||||||||||..|||.|.||.||||||
BPUM_0048___s 1239 TACAACCTATGAACTCATGAAACAAGTTATGCAAGAATCTGATGAAAAAA 1288
BSNT_00115___ 1300 -----GAATATGCATCAAACCGAAGGCTGAAAAAAGAGTTTCAACAGTAT 1344
|| |||| |||||.|...||||.||..|.|||...|||.|.
BPUM_0048___s 1289 CCTACGA----GCAT--AACCGGAAATTGAAGAAGAAATTTAGCCAGCAC 1332
BSNT_00115___ 1345 TGTTCTAAATCCAAGCAGGTTGAAGAGCTGATTGAGGATGAGCTCGCACA 1394
||.||.|||||.||.||.|||||.||..|||||||.||.|||.||||..|
BPUM_0048___s 1333 TGCTCAAAATCAAAACATGTTGAGGAATTGATTGAAGAGGAGATCGCTTA 1382
BSNT_00115___ 1395 TCATCATGCCCATTTGACACTCAAGAAAAAAGTCCAAGACAGCAGGCGCC 1444
..||.|.|||.|...|||..|.||||||||.||||||||||||||.||.|
BPUM_0048___s 1383 CTATAAAGCCAACCAGACCTTGAAGAAAAAGGTCCAAGACAGCAGACGAC 1432
BSNT_00115___ 1445 TTGTTGCTGAACAGCTTTTAGGCGTTTCTGAGGTTATGGCCGACTTTTCT 1494
||||.|||||||||||..|.|||||.||..|.||.||||..||.|||||.
BPUM_0048___s 1433 TTGTAGCTGAACAGCTGATGGGCGTCTCACAAGTGATGGAGGATTTTTCC 1482
BSNT_00115___ 1495 CGGGAAATAAAAAGAGAGCGAGAACAGCACTTTCTGCAGGAAGAGCAAAT 1544
||||||||||||.|.||..||||||||||.|||.|.||.||||||||.||
BPUM_0048___s 1483 CGGGAAATAAAACGGGAAAGAGAACAGCATTTTATTCAAGAAGAGCAGAT 1532
BSNT_00115___ 1545 CATAGAAGCGCTTCAGCATTTCGGAATTGAGATTCAGCATGTCGAGATCT 1594
.||||||||.||||||||.||.||||||||.|||||.||.||.||.||.|
BPUM_0048___s 1533 GATAGAAGCACTTCAGCACTTTGGAATTGAAATTCAACAAGTAGAAATTT 1582
BSNT_00115___ 1595 ATAGTCTT-GAACAAGGAAATATCGATATTGAAATGACCATTCCGTTCAG 1643
|||| ||| ||.||.||.|||.|||||||||||||||..||.||.|...|
BPUM_0048___s 1583 ATAG-CTTGGAGCAGGGGAATGTCGATATTGAAATGAGAATCCCCTATTG 1631
BSNT_00115___ 1644 C---GGACATGGAGAAAGTGAAAAAATCATTGCTCCTATGCTTTCTGACA 1690
| ||||||||.|||.||||.||||||||.||.||||||||.||.||.|
BPUM_0048___s 1632 CCAAGGACATGGGGAATGTGAGAAAATCATCGCCCCTATGCTCTCAGATA 1681
BSNT_00115___ 1691 TTCTGGAGGAACAAATTCTTGTGAAAGCCGAACAGCACTCTCC---GCAT 1737
||.|.||.||.||.|||.|.||.||.|| |.||||.|.|.| |||.
BPUM_0048___s 1682 TTTTAGAAGAGCAGATTTTAGTCAAGGC---AGAGCAGTGTGCAGAGCAC 1728
BSNT_00115___ 1738 CCGAATGGATACAGCCATGTCGCCTTTGGATCAACAAAATCATACAGGGT 1787
||.|..||.||..|.||.||.|..|||||.||..||||.|||||..|.||
BPUM_0048___s 1729 CCAACAGGCTATTGTCACGTTGTATTTGGCTCTGCAAAGTCATATCGAGT 1778
BSNT_00115___ 1788 GTCCACGGGAGCTGCTCACGCTGCGAAGGGCGGCGGCCTTGTCTCCGGTG 1837
..|.||.||.|..||.||.||.|||||.|||||.||..|.||.||.||.|
BPUM_0048___s 1779 AGCTACAGGCGTAGCGCATGCAGCGAAAGGCGGAGGGTTAGTGTCTGGAG 1828
BSNT_00115___ 1838 ACAGCTACAGCATGATGGAGCTTGGAGCCAGAAAATATGCTGCAGCAATC 1887
||||||||||||||||||||||.||.||..|.||||||||||||||.||.
BPUM_0048___s 1829 ACAGCTACAGCATGATGGAGCTGGGTGCGGGCAAATATGCTGCAGCTATT 1878
BSNT_00115___ 1888 AGTGACGGAATGGGCAATGGCGCAAGAGCGCACTTTGAAAGCAATGAAAC 1937
|||||.||.|||||.|||||.|||||.||.||||||||||||||||||||
BPUM_0048___s 1879 AGTGATGGGATGGGTAATGGAGCAAGGGCTCACTTTGAAAGCAATGAAAC 1928
BSNT_00115___ 1938 GATCAAGCTTCTTGAAAAAATCCTTGAATCGGGCATTGATGAAAAAATAG 1987
|||.|||||..|.||||||||..|.|..||.||.||..||||||||.|||
BPUM_0048___s 1929 GATTAAGCTGTTAGAAAAAATATTAGCTTCAGGTATCAATGAAAAAGTAG 1978
BSNT_00115___ 1988 CAATTAAAACGATCAACAGCATACTGTCTCTAAGGACAACTGACGAAATA 2037
|.||||||||.||.||.||.||..|.|||.||.|.||.||.||.|||||.
BPUM_0048___s 1979 CGATTAAAACCATTAATAGTATTTTATCTTTACGAACGACAGATGAAATC 2028
BSNT_00115___ 2038 TATTCCACGCTTGACCTATCTATTATCGATCTTCAAGATGCCAGCTGTAA 2087
|||||.||..|.||..||||.|||||.|||.|.||.|||||.||||||||
BPUM_0048___s 2029 TATTCAACATTAGATTTATCCATTATTGATTTACAGGATGCGAGCTGTAA 2078
BSNT_00115___ 2088 ATTTTTGAAGGTTGGATCGACGCCCAGCTTTATCAAACGGGGTGACCAGG 2137
.||..|.|||.|.||.||.||.|||||||||||.|||||||||||.||||
BPUM_0048___s 2079 GTTCCTTAAGATCGGTTCAACACCCAGCTTTATTAAACGGGGTGATCAGG 2128
BSNT_00115___ 2138 TCATGAAAGTTCAAGCGAGCAATCTGCCAATCGGTATTATTAATGAATTC 2187
|.|||||.||.||||||||||||.|.||.||.||.||||||.|||||||.
BPUM_0048___s 2129 TGATGAAGGTACAAGCGAGCAATTTACCGATTGGGATTATTGATGAATTT 2178
BSNT_00115___ 2188 GATGTGGAGGTTGTGAGTGAACAGCTGAAAGCGGGTGACCTCTTAATTAT 2237
||.|||||||||||||||||||||.||||.||.||.||.||..|.|||||
BPUM_0048___s 2179 GAAGTGGAGGTTGTGAGTGAACAGATGAAGGCAGGAGATCTGCTGATTAT 2228
BSNT_00115___ 2238 GATGAGTGATGGCATTTTTGAGGGGCCTAAGCATGTGGAAAATCACGACT 2287
||||||.||||||||.|||||.||.||.||||||.|.||||||||.||..
BPUM_0048___s 2229 GATGAGCGATGGCATCTTTGAAGGACCAAAGCATATTGAAAATCATGATC 2278
BSNT_00115___ 2288 TATGGATGAAACGTAAAATGAAAGGGTTGAAAACAAATGACCCGCAGGAG 2337
|.|||.||||.||.|||||||||.|.||.||||||.|.||.|||||.|||
BPUM_0048___s 2279 TCTGGGTGAAGCGCAAAATGAAAAGCTTTAAAACAGAAGATCCGCAAGAG 2328
BSNT_00115___ 2338 ATTGCCGATTTGCTTATGGAAGAAGTCATCCGCACAAGATCCGGCCAAAT 2387
|||||.|||||..|.||||||||.|||||.||.||||||||.||.|||||
BPUM_0048___s 2329 ATTGCTGATTTATTAATGGAAGAGGTCATTCGAACAAGATCGGGTCAAAT 2378
BSNT_00115___ 2388 TGAGGACGATATGACTGTTGTTGTCGTCCGGATTGATCACAATACACCGA 2437
.||.|||||||||||.|||||||||.||.||.|||||||||||||.||.|
BPUM_0048___s 2379 CGATGACGATATGACGGTTGTTGTCATCAGGCTTGATCACAATACGCCTA 2428
BSNT_00115___ 2438 AGTGGGCATCCATTCCTGTTCCGG--CAATCTTTCAAAACAAACAAGAAA 2485
|.|||||||||||||| ..|.|| ||.|||.||...|.||||||||.|
BPUM_0048___s 2429 AATGGGCATCCATTCC--GACAGGTACATTCTATCTTGAGAAACAAGAGA 2476
BSNT_00115___ 2486 TTTCATAA 2493
||||.|.|
BPUM_0048___s 2477 TTTCTTGA 2484
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