Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00118 and BPUM_0050
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:03
# Commandline: needle
# -asequence dna-align/BSNT_00118.1.24716.seq
# -bsequence dna-align/BPUM_0050___yabT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00118-BPUM_0050___yabT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00118-BPUM_0050___yabT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00118
# 2: BPUM_0050___yabT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1101
# Identity: 628/1101 (57.0%)
# Similarity: 628/1101 (57.0%)
# Gaps: 300/1101 (27.2%)
# Score: 1849.5
#
#
#=======================================
BSNT_00118 0 -------------------------------------------------- 0
BPUM_0050___y 1 ATGAATTCGGTTTCTAACATTCCGTTAGGCACGGTGATTCAAGGGAAATG 50
BSNT_00118 0 -------------------------------------------------- 0
BPUM_0050___y 51 GCATCACCATCATTACCGCATTGTAAAAGAGCTGGGAAAAGGGGCGAACG 100
BSNT_00118 1 -----GTGTATTTGGCAGAAGCATCAGATGGACATGTTG-CCTTAAAGGT 44
||.|||.|.||.|||.|..||.||||.||.||.| ||||||| ||
BPUM_0050___y 101 GTATTGTCTATCTAGCCGAATCGCCAAATGGTCAAGTAGCCCTTAAA-GT 149
BSNT_00118 45 GAGTGATGACAGCCTGTCT-ATTACTTCTGAAGTGAATGTCTTGAAATCT 93
||||||||||||..|| || |||.|.||||||||.|||||.||.|||||.
BPUM_0050___y 150 GAGTGATGACAGTATG-CTCATTGCATCTGAAGTCAATGTATTAAAATCC 198
BSNT_00118 94 TTCTCAAAGGCCCAGTCCGTT----ACGATGGGGCCTTCTTTTTTTGATA 139
||.||.||||| |||..| ||.||||||||||||||||.|||||
BPUM_0050___y 199 TTTTCTAAGGC----TCCTGTGAAAACCATGGGGCCTTCTTTTTATGATA 244
BSNT_00118 140 CGGATGAT---ACTTATATTCCCGGTACCA--ATACGAAAG-TTTCATTT 183
.||||||| |.||| |||||| || .|.|.|||| .|||.|||
BPUM_0050___y 245 TGGATGATGCGATTTA---TCCCGG---CATGCTTCAAAAGCGTTCCTTT 288
BSNT_00118 184 TATGCAATGGAATACATAAAAGGGCC---GCTGCTTTTGAAGTATGTCAG 230
||||..|||||.||..|.|.|||.|| .|||||| .|.|.|||||.
BPUM_0050___y 289 TATGTGATGGAGTATGTCAGAGGCCCATTACTGCTT---GATTTTGTCAA 335
BSNT_00118 231 TGATAAAGGAGGAGAGTGGATACCT-GTATTAATGATTCAGCTGTTAT-- 277
..|.|||||.|..|||||||| |.| ||.||||||.|||||||.||||
BPUM_0050___y 336 ACAAAAAGGTGATGAGTGGAT-CGTCGTTTTAATGGTTCAGCTTTTATCT 384
BSNT_00118 278 ---CCAGCTTATCGGTGCTT-CACCAGCAAGGATGGATATTCGGCGATCT 323
|.||||.|| || ||.||..||||.|||||.||.||.|| ||
BPUM_0050___y 385 AACCTAGCTCAT------TTACATCAAGAAGGGTGGATCTTTGGTGA-CT 427
BSNT_00118 324 T-AAACCTGACAATCTGATCGTAACTGGTCCGCCCGCAAGGATCCGCTGC 372
| ||.||.||||||||.|||||..|.|||||.||.||.|.||||||.|||
BPUM_0050___y 428 TGAAGCCAGACAATCTTATCGTGTCAGGTCCCCCAGCCACGATCCGGTGC 477
BSNT_00118 373 ATTGATGTGGGCGGCACGACAAAGGAAGGCCGGGCGATAAAAGAGTATAC 422
||||||||.||.||.||||||||.|.||||.|.||.||.||.||.|||||
BPUM_0050___y 478 ATTGATGTAGGGGGAACGACAAAAGCAGGCAGAGCAATCAAGGAATATAC 527
BSNT_00118 423 GGAGTTTTATGACAGAGGCTATTGGGGGTATGGAACAAGAAAGGCAGAGC 472
.|||||||.|||..|||||||||||||.|..||.||||||||||||||||
BPUM_0050___y 528 AGAGTTTTTTGATCGAGGCTATTGGGGATTCGGTACAAGAAAGGCAGAGC 577
BSNT_00118 473 CATCCTATGATCTGTTCGC----AGTTGCCATGATTATGATCAACAGTGT 518
|||||||||||||.||.|| || ||||.|.|||.|.||..|||.
BPUM_0050___y 578 CATCCTATGATCTATTTGCCTTAAG----CATGGTGATGGTGAATTGTGC 623
BSNT_00118 519 GCATAAAAAAGAATTTAAGAAAA-----CGAACCAGCCCAAAGAACAGCT 563
|.||||.||||||||.|| |||| .|||||.| ||.|.|||||
BPUM_0050___y 624 GTATAAGAAAGAATTCAA-AAAAGGAGTAGAACCGG----AAAAGCAGCT 668
BSNT_00118 564 T---AGGTCTCTCATCGAAGGAAACCCGCTGCTTCA--AAAG---TATAA 605
| ||..| |||.||||||.| |.|||.| |||| |||.|
BPUM_0050___y 669 TTACAGAGC---CATTGAAGGACA-----TCCTTTATTAAAGCGATATGA 710
BSNT_00118 606 A--------AAAGCGCTTTTTTCAGC-CTTGAACGGAGATTATCAATCCG 646
| |||| ||| || ||..|| ||..|.||||||||.|
BPUM_0050___y 711 AAGGGTATTAAAG-GCT-------GCTCTACAA-GGTAAATATCAATCAG 751
BSNT_00118 647 CAGATGAAATGAAAAAGGATATGCTAGACGCGGGGCA------------- 683
|.|..|.||||||.|..|..|||||..|.|..||.||
BPUM_0050___y 752 CGGCGGCAATGAAGAGTGCGATGCTGAAAGAAGGCCAGCTGATCGCTTCA 801
BSNT_00118 684 --AAAAGC-AG-CACAAAGAA--AACAGCATATAAAAGCATCACCG--CA 725
|||||| || || |||||| |||||||.|.|||.|.| ||..| ||
BPUM_0050___y 802 AGAAAAGCGAGTCA-AAAGAAGCAACAGCAAAAAAATGGA-CAAAGGCCA 849
BSNT_00118 726 GCCTG----------CCA-----------CACGACAAAGA----CAGCAA 750
| ||| ||| |||||...||| |||||
BPUM_0050___y 850 G-CTGGTCAACAAAACCAACAGGTGACTTCACGATCGAGAGTTGCAGCA- 897
BSNT_00118 751 ATACCGCGCCAAAGAAAAATAAC-GAAG-ACGCGATATACCCCAAAACAG 798
|| |||||.||| .||| ||||
BPUM_0050___y 898 -------GC-----AAAAAGAACACAAGTACGC----------------- 918
BSNT_00118 799 AAACCGGCTAAGTCGGGGGGGTTATTTGAAACAACGCTGATCGTGATCAG 848
||| ||.||.||.|||.|.||||||||.|..||.||||||..|||
BPUM_0050___y 919 AAA------AAATCAGGTGGGCTTTTTGAAACGATTCTAATCGTGTGCAG 962
BSNT_00118 849 TGTTTTAGCGCTTTATTTCGCCTATATTATTTTTTTCTTAATCTGA---- 894
|||..|.||.|||||.|..||.|||.|..||||.||| |||.
BPUM_0050___y 963 TGTACTTGCTCTTTACTGTGCATATGTCGTTTTGTTC-----CTGCTATA 1007
BSNT_00118 894 - 894
BPUM_0050___y 1008 G 1008
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