Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00134 and BPUM_0061

See Amino acid alignment / Visit BSNT_00134 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:05
# Commandline: needle
#    -asequence dna-align/BSNT_00134___sul.1.24716.seq
#    -bsequence dna-align/BPUM_0061___sul.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00134___sul-BPUM_0061___sul.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00134___sul-BPUM_0061___sul.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00134___sul
# 2: BPUM_0061___sul
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 883
# Identity:     625/883 (70.8%)
# Similarity:   625/883 (70.8%)
# Gaps:          50/883 ( 5.7%)
# Score: 1992.5
# 
#
#=======================================

BSNT_00134___      1 ATGGCGCAGCACACAATAGATCAAACA----CAAGTCATCCACACTAAGC     46
                     |||.|.||    ||||..|||.||.||    .|||||||.||..|.||||
BPUM_0061___s      1 ATGACACA----ACAAGTGATAAAGCAGCCTAAAGTCATACAAGCCAAGC     46

BSNT_00134___     47 -CCA-GCGCTTTATCATATAAAGAGAAGACGCTGGTGATGGGAATTTTAA     94
                      ||| .|.|||..|  |||.||||.|||||..||||.|||||.|||||||
BPUM_0061___s     47 ACCACACCCTTAGT--TATGAAGAAAAGACATTGGTCATGGGCATTTTAA     94

BSNT_00134___     95 ACGTAACGCCTGACTCTTTCTCGGACGGCGGAAAAT---ATGACAGCTTG    141
                     |.||.||.|||||||||||.||.||.||.|||||.|   ||.| ||  ||
BPUM_0061___s     95 ATGTCACACCTGACTCTTTTTCAGATGGAGGAAAGTTTAATCA-AG--TG    141

BSNT_00134___    142 GACAAGGCGCT-GCTGCACGCGAAAGAGATGATCGATGATGGTGCCCATA    190
                     ||.||.||||| ||| ||.||...|.||.||||.||.||.||.||.||||
BPUM_0061___s    142 GATAAAGCGCTGGCT-CATGCAGCACAGCTGATAGAGGACGGGGCACATA    190

BSNT_00134___    191 TCATTGATATCGGAGGGGAATCGACAAGGCCTGGCGCTGAGTGGGTATCT    240
                     ||||||||||.||.||.||||||||..|.||.||.||.|..|..||.||.
BPUM_0061___s    191 TCATTGATATAGGCGGAGAATCGACTCGCCCAGGAGCGGCATTTGTCTCA    240

BSNT_00134___    241 GAGGATGAGGAGATGTCCAGAGTCATTCCGGTGATTGAGCGGATTACGAA    290
                     ||..|.||.|||.|.||.|||||||||||.||.||.||...|||.||.||
BPUM_0061___s    241 GAACAAGAAGAGCTTTCAAGAGTCATTCCCGTCATCGAAAAGATCACAAA    290

BSNT_00134___    291 AGAGCTTGG-TGTTCCTATTTCTGTAGATACGTACAAGGCTTCTGTCGCA    339
                     ||| .|||| ||||||.||||||.|.||||||||.||.|||..|||.|||
BPUM_0061___s    291 AGA-ATTGGATGTTCCAATTTCTATTGATACGTATAAAGCTCATGTAGCA    339

BSNT_00134___    340 GATGAAGCAGTGAAAGCCGGCGCATCCATTATCAATGATATTTGGGGTGC    389
                     |||||||||||||||||.||.||.|||||.||.||||||.|.|||||.||
BPUM_0061___s    340 GATGAAGCAGTGAAAGCTGGAGCTTCCATCATTAATGATGTATGGGGAGC    389

BSNT_00134___    390 CAA-ACATGATCCGAAGATGGCTTCCGTTGCAGCTGAA-CATAATGTTCC    437
                     .|| .|| |||||..|.|||||...|||.||||| ||| ||.|||||.||
BPUM_0061___s    390 GAAGGCA-GATCCTCAAATGGCGCACGTAGCAGC-GAAGCACAATGTGCC    437

BSNT_00134___    438 AATTGTTCTCATGCATAACCGCCCTGAAAGAAACTACA---ATGACTTAT    484
                     ||||.||.|.|||||.||.||.||.|||.||||.||||   ||  ||.||
BPUM_0061___s    438 AATTATTTTAATGCACAATCGGCCAGAACGAAATTACACACAT--CTAAT    485

BSNT_00134___    485 TGCCGGATATGCTGTCGGACTT-AATGGAGAGTGTAAAAATTGCTGTTGA    533
                     | .|.||||||.|..|.||.|| ||| ||.|||||..|||||||.....|
BPUM_0061___s    486 T-TCAGATATGATCGCAGATTTGAAT-GAAAGTGTTCAAATTGCAAAACA    533

BSNT_00134___    534 GGCCGGAGT---AGACGAGAAGAACATTATTCTTGATCCCGGTATCGGTT    580
                     .||.||.||   .||.||.|.||.|| |||  |.||.||.|||||.||.|
BPUM_0061___s    534 AGCGGGTGTCCGTGATGACATGATCA-TAT--TAGACCCAGGTATAGGGT    580

BSNT_00134___    581 TCGCGAAAACCTATCACGATAACTTGGCAGTGATGAACAAACTAG-AGAT    629
                     |.|||||||...|..|.||.|||.||...||.|||||..|.||.| |.||
BPUM_0061___s    581 TTGCGAAAAATAAAGAGGACAACCTGATGGTCATGAATGAGCTTGAACAT    630

BSNT_00134___    630 TT---TCAGCGGAGTGGGATATCCGGTTCTTCTGGCAACCTCCCGAAAAA    676
                     ||   |||||    |.||.|||||..|.||..|.||.||.||.||||||.
BPUM_0061___s    631 TTTTGTCAGC----TCGGGTATCCACTGCTCTTAGCTACATCTCGAAAAC    676

BSNT_00134___    677 GATTCATCGG-GCGTGTTCTGGATCTTCCGCCTGAGGAGCGGGCTGAGGG    725
                     |||||||||| || |||..|.||.||.||.||.||.|||||..||||.||
BPUM_0061___s    677 GATTCATCGGAGC-TGTCTTAGACCTGCCACCGGAAGAGCGTACTGAAGG    725

BSNT_00134___    726 CACAGGCGCGACTGTGTGTCTCGGCATTCAAAAAGGCTGTGACATTGTCA    775
                     .||.||.|||||.||.||.||.||.||||||||||||.|||..||.||..
BPUM_0061___s    726 AACGGGGGCGACGGTCTGCCTTGGAATTCAAAAAGGCAGTGCGATGGTTC    775

BSNT_00134___    776 GGGTCCATGATGTAAAGCAAATTGCCAGAATGGCGAAAATGATGGACGCG    825
                     ||||.|||||||||||..||||.||.||||||||.|||||||||||.||.
BPUM_0061___s    776 GGGTACATGATGTAAAAGAAATCGCAAGAATGGCAAAAATGATGGATGCC    825

BSNT_00134___    826 ATGCTGAATAAGGGAGGGGTGCACCATGGATAA    858
                     |||||||||||||||||.|...|.|||.|||||
BPUM_0061___s    826 ATGCTGAATAAGGGAGGCGCTTATCATCGATAA    858


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