Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00175 and BPUM_0069
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:05
# Commandline: needle
# -asequence dna-align/BSNT_00175.1.24716.seq
# -bsequence dna-align/BPUM_0069___mcsA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00175-BPUM_0069___mcsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00175-BPUM_0069___mcsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00175
# 2: BPUM_0069___mcsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity: 250/616 (40.6%)
# Similarity: 250/616 (40.6%)
# Gaps: 284/616 (46.1%)
# Score: 736.5
#
#
#=======================================
BSNT_00175 0 -------------------------------------------------- 0
BPUM_0069___m 1 GTGAAAAGATTGATTTGTCAAGAATGCAATGAGAGACCAGCCACTTTTCA 50
BSNT_00175 0 -------------------------------------------------- 0
BPUM_0069___m 51 CTTTACGAAAGTTATAAATGGAGAAAAACAAGAAATGCACATATGTGAAC 100
BSNT_00175 0 -------------------------------------------------- 0
BPUM_0069___m 101 AATGTGCAAAAGAAAACAGTGATTCATATGCTATGAGTGGAAACCAAGGT 150
BSNT_00175 0 -------------------------------------------------- 0
BPUM_0069___m 151 TTCTCTATTCACAACTTATTATCGGGTTTATTGAATATTGATCCTAGCTT 200
BSNT_00175 1 -----------------ATGGAT--TCTTCATTTCAAAATGCAGGA-ACT 30
|.|||| |||...||||||.|.|||.|| |
BPUM_0069___m 201 TACGACAAGTGCGAATAAGGGATCATCTATTTTTCAAGAAGCAAGAGA-- 248
BSNT_00175 31 CAAATGTTCAGTCACTCGGAGCAAATATCTGCTTGTCCGAAATGCGGAAT 80
||| |||.||| |||||.||.||.||..|
BPUM_0069___m 249 ---------AGT-----GGATCAA---------TGTCCTAAGTGTGGCTT 275
BSNT_00175 81 GACTTTTCAGCAATTCAGAAAAATTGGCCGTTTTGGATGTTCGGAATGTT 130
.||.|||||.|||||||||||||..|||||||||||.|||.|.|||||.|
BPUM_0069___m 276 AACCTTTCAACAATTCAGAAAAACAGGCCGTTTTGGCTGTGCAGAATGCT 325
BSNT_00175 131 ACAAAACAT--TTCAT---AGCAACATT---ACACCAATCCTACGTAAAG 172
|| |||.| |.||..||| || ||..|..||||.||||
BPUM_0069___m 326 -------ATCGTTCGTTTGACCAGTATTTGAAC-CCTGTTTTACGGAAAG 367
BSNT_00175 173 TGCACAGCGGAAACACTGTGCATGCAGGTAAGATACCGAAACGAATAGGC 222
|.||.||.|||||.||.||.|||...||.|||.|.||.|||||.||.|.|
BPUM_0069___m 368 TCCATAGTGGAAATACAGTCCATAATGGAAAGGTGCCTAAACGGATTGCC 417
BSNT_00175 223 GGCAATCTTCATGTCAGACGGCAGATTGATATGCT-----AAAAAAGGAA 267
||||.|||||||||..|.|||.|..||||..||.| ||.||..|||
BPUM_0069___m 418 GGCAGTCTTCATGTGCGCCGGAAACTTGAGTTGATGCAGCAAGAACTGAA 467
BSNT_00175 268 TTAGAATCCTTAATCCATCAAGAAGAATTTGAAAATGCAGCTCATGTAAG 317
..|| |||||..|.||||||||.||.|||||.|||||..|.||..|
BPUM_0069___m 468 GCAG-----TTAATTGAACAAGAAGAGTTCGAAAAAGCAGCGGAAGTTCG 512
BSNT_00175 318 AGATCAAATTCGTTCATTAGAACA--ATCACTCAAAAGTACAGATAGTGA 365
|||||||||||||.|||||||.|| |.||.||.|| .|||| .
BPUM_0069___m 513 AGATCAAATTCGTGCATTAGAGCATGAGCAATCTAA---GCAGA-----G 554
BSNT_00175 366 GGAGGAACAGGAGTAA 381
|||||.| ||.|||
BPUM_0069___m 555 GGAGGGA---GATTAA 567
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