Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00180 and BPUM_0072
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:06
# Commandline: needle
# -asequence dna-align/BSNT_00180___radA.1.24716.seq
# -bsequence dna-align/BPUM_0072___radA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00180___radA-BPUM_0072___radA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00180___radA-BPUM_0072___radA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00180___radA
# 2: BPUM_0072___radA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1392
# Identity: 1002/1392 (72.0%)
# Similarity: 1002/1392 (72.0%)
# Gaps: 87/1392 ( 6.2%)
# Score: 3653.0
#
#
#=======================================
BSNT_00180___ 1 ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGCTACGAGTC 50
BPUM_0072___r 0 -------------------------------------------------- 0
BSNT_00180___ 51 TCCAAAATGGATGGGGAAATGTCCGGGCTGCGGTGCTTGGAATACAATGG 100
||||||||||||||.||||||||..|.|||||.|..|||.
BPUM_0072___r 1 ----------ATGGGGAAATGTCCAGGCTGCGGCACGTGGAACAGTATGA 40
BSNT_00180___ 101 TGGAAGAAATGATTAAAAAAGCACCGGCCAATCG--GAGAGCGGCTTTTT 148
..|||||..|..||...||||..||.||.||.|| || ||| ||||||.
BPUM_0072___r 41 CAGAAGAGGTCGTTCGTAAAGAGCCAGCAAACCGTCGA-AGC-GCTTTTA 88
BSNT_00180___ 149 CTCATTCTGTTCAAACTGTACAGAAACCTTCACCTATTACATCAATCGAA 198
..||||||||||||||..|.||.||||||||||||||..|..||||.|||
BPUM_0072___r 89 ACCATTCTGTTCAAACCATTCAAAAACCTTCACCTATATCTGCAATTGAA 138
BSNT_00180___ 199 ACATCAGAAGAACCCCGCGTCAAAACCCAGCTTGGCGAGTTTAACAGAGT 248
||||||||.||||||||..|||||||..|..|.|..||.|||||..||||
BPUM_0072___r 139 ACATCAGATGAACCCCGAATCAAAACGAATTTAGAAGAATTTAATCGAGT 188
BSNT_00180___ 249 ACTCGGCGGAGGTGTCGTTAAAGGCTCCCTCGTTTTAATTGGCGGTGATC 298
|.|.||..|.||..|.||.||||||||.||.|||.|.||||||||.||||
BPUM_0072___r 189 ATTAGGAAGTGGAATTGTCAAAGGCTCTCTTGTTCTCATTGGCGGAGATC 238
BSNT_00180___ 299 CTGGTATCGGAAAGTCAACGCTATTACTGCAGGTTTCCGCTCAATTATCA 348
||||.||.||.|||||.||..|||||.|.||.||.||.||.||..|.|||
BPUM_0072___r 239 CTGGGATTGGGAAGTCCACTTTATTATTACAAGTATCAGCACAGCTCTCA 288
BSNT_00180___ 349 GGCTCATCAAA--CAG--TGTCCTGTATATTTCGGGAGAAGAATCTGTAA 394
| ||.||| ||| |||..|.||.||.||.||.||.||.||..|.|
BPUM_0072___r 289 G----ATAAAAATCAGAATGTATTATACATATCTGGTGAGGAGTCCATTA 334
BSNT_00180___ 395 AGCAAACGAAGCTGCGAGCAGACCGTCTGGGCATTAATAATC-CGTCACT 443
|.|||||||||||..||||.|||||.||.|||| |||.||.| |.||..|
BPUM_0072___r 335 AACAAACGAAGCTAAGAGCGGACCGCCTCGGCA-TAAAAAGCACCTCTTT 383
BSNT_00180___ 444 GCATGTTTTATCTGAAACCGATATGGAGTATATTTCGTCTGCTATACAAG 493
.||||||||..||||||||||||||||||||||..|||||||||||||||
BPUM_0072___r 384 ACATGTTTTGGCTGAAACCGATATGGAGTATATAACGTCTGCTATACAAG 433
BSNT_00180___ 494 AGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACGGTTTACCAA 543
|||||||.||.||.||||||||.||.||.||.||||||||.|||||.|||
BPUM_0072___r 434 AGATGAAACCCGCTTTTGTCGTGGTGGATTCGATTCAAACCGTTTATCAA 483
BSNT_00180___ 544 AGCGATATTACATCGGCTCCAGGCAGTGTGTCACAGGTCAGAGAATGTAC 593
|||||||||||.||.|||||.||...|||.||.||.||.|||||||||||
BPUM_0072___r 484 AGCGATATTACGTCAGCTCCTGGGTCTGTATCTCAAGTGAGAGAATGTAC 533
BSNT_00180___ 594 TGCTGAGCTGATGAAAATCGCAAAAACAAAAGGTATTCCGATTTTTATCG 643
.||..||||||||||.||.|||||.|||||.||.|||||.||||||||||
BPUM_0072___r 534 AGCACAGCTGATGAAGATTGCAAAGACAAATGGGATTCCAATTTTTATCG 583
BSNT_00180___ 644 TAGGGCACGTGACGAAAGAAGGGTCTATTGCAGGTCCGAGACTGTTGGAG 693
|.||.||||||||.||||||||.||.||.|||||.||..|.||.||.|||
BPUM_0072___r 584 TTGGTCACGTGACCAAAGAAGGCTCGATCGCAGGCCCACGTCTTTTAGAG 633
BSNT_00180___ 694 CATATGGTTGACACTGTTTTATATTTTGAAGGAGAACGCCACCATACTTT 743
||||||||.|||||.|||.|.|||||||||||.||.||.||.|||||.||
BPUM_0072___r 634 CATATGGTGGACACGGTTCTTTATTTTGAAGGCGAGCGTCATCATACGTT 683
BSNT_00180___ 744 CCGTATTTTGCGGGCTGTAAAAAACCGTTTCGGATCTACAAACGAAATGG 793
.|||||.||.||.||.||.||||||||.||.||.||.||.||.|||.|.|
BPUM_0072___r 684 TCGTATCTTACGTGCGGTGAAAAACCGATTTGGCTCGACGAATGAACTAG 733
BSNT_00180___ 794 GCATTTTCGAAATGCGGGAAGAGGGGCTCACTGAGGTTTTGAATCCTTCG 843
|.|||||.||||||.|.||.||.||||||||.||.||.||.||.||.||.
BPUM_0072___r 734 GGATTTTTGAAATGAGAGAGGAAGGGCTCACGGAAGTATTAAACCCATCC 783
BSNT_00180___ 844 GAAATTTTCTTAGAAGAACGCTCTGCTGGTTCCGCAGGCTCGAGTATCAC 893
||||||||||||||||||||.||.||.|||....|.||.|||.||.||..
BPUM_0072___r 784 GAAATTTTCTTAGAAGAACGTTCGGCAGGTGTATCGGGTTCGTGTGTCGT 833
BSNT_00180___ 894 TGCCTCTATGGAGGGCACTAGACCGATTCTCGTTGAAATTCAGGCGCTCA 943
||||||.|||||.||.||.|||||..||||.||.||.||.||.||..|.|
BPUM_0072___r 834 TGCCTCAATGGAAGGAACAAGACCTGTTCTAGTCGAGATACAAGCATTAA 883
BSNT_00180___ 944 TCTCGCCAACAAGCTTTGGCAACCCAAGGCGT---ATGGCAACGGGAATA 990
|.||.||.||||||||.||.||.|| |||| |||||.||.||..|.
BPUM_0072___r 884 TTTCACCGACAAGCTTCGGAAATCC---GCGTAGAATGGCCACTGGTCTT 930
BSNT_00180___ 991 GACCATAACAGGGTTTCTCTGTTAATGGCTGTGTTAGAAAAAAGAGTTGG 1040
||.|||||..|.||.||.||..|.|||||.||.|||||||||.|.|||||
BPUM_0072___r 931 GATCATAATCGAGTGTCACTACTCATGGCGGTTTTAGAAAAACGTGTTGG 980
BSNT_00180___ 1041 ACTGCTGCTGCAAAATCAGGATGCTTATTTGAAAGTGGCTGGCGGCGTTA 1090
||||||.||||||||.||||||||.|||||.||.||.||.|||||.||.|
BPUM_0072___r 981 ACTGCTTCTGCAAAACCAGGATGCGTATTTAAAGGTCGCAGGCGGTGTGA 1030
BSNT_00180___ 1091 AGCTTGATGAACCGGCAATTGATCTT-GCGATTGTGATTAGTATCGCATC 1139
|||||||.|||||.|||||||| ||| ||.||||.|.|.||.||.|||||
BPUM_0072___r 1031 AGCTTGACGAACCAGCAATTGA-CTTGGCCATTGCGGTCAGCATTGCATC 1079
BSNT_00180___ 1140 AAGCTTTAGAGACACACCTCCAAATCCTGCAGATTGTTTTATTGGAGAAG 1189
||||||||.||||.||.|.||..|||..||.|||||.|||||.|||||.|
BPUM_0072___r 1080 AAGCTTTAAAGACGCAGCGCCGCATCAAGCGGATTGCTTTATAGGAGAGG 1129
BSNT_00180___ 1190 TGGGATTAACCGGAGAAGTCCGGCGGGTTTCAAGAATTGAACAGCGTGTG 1239
|.||..|.||.|||||||||.|..|.||.|||||||||||||||||||||
BPUM_0072___r 1130 TCGGCCTGACGGGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGTGTG 1179
BSNT_00180___ 1240 AAAGAAGCGGCAAAGCTTGGCTTTAAACGCATGATCATACCCGCGGCAAA 1289
.|.|||||.||.||.||.||.||||||||.|||.|.||.||...||||||
BPUM_0072___r 1180 CAGGAAGCTGCGAAACTAGGATTTAAACGAATGTTTATTCCTCAGGCAAA 1229
BSNT_00180___ 1290 TCTGGACGGATGGACAAAACCAAAAGGGATTGAGGTTA-TCGGAGTAGCA 1338
|.|.||.|||||||.|||.||.|.||||||||| |||| ||||.||||.|
BPUM_0072___r 1230 TATAGATGGATGGAAAAAGCCGAGAGGGATTGA-GTTAGTCGGTGTAGAA 1278
BSNT_00180___ 1339 AATGTTGCAGAAGCGCTTCGTACTTCATTAGGAGGATAA--- 1377
|||||.||.||.||.|||||.|.||||.||||.||||.|
BPUM_0072___r 1279 AATGTAGCGGAGGCACTTCGAATTTCACTAGGGGGATCATAG 1320
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