Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00185 and BPUM_0075
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:06
# Commandline: needle
# -asequence dna-align/BSNT_00185___ispD.1.24716.seq
# -bsequence dna-align/BPUM_0075___ispD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00185___ispD-BPUM_0075___ispD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00185___ispD-BPUM_0075___ispD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00185___ispD
# 2: BPUM_0075___ispD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 769
# Identity: 482/769 (62.7%)
# Similarity: 482/769 (62.7%)
# Gaps: 149/769 (19.4%)
# Score: 1432.0
#
#
#=======================================
BSNT_00185___ 1 ATGAGTTATGATGTGGTGATTCCTGCAGCCGGACAGGGAAAGCGGATGAA 50
|||..||||||.||.||.|||||.||.||.||.|||||.||.||.|||||
BPUM_0075___i 1 ATGTATTATGAAGTAGTTATTCCGGCTGCGGGGCAGGGGAAACGAATGAA 50
BSNT_00185___ 51 GGCAGGGAGAAATAAACTGTTCATTGAGCTGAAAGGAGACCCGGTGA--- 97
|||.||..|.|||||.||.||.||||||||||||.||...|||||.|
BPUM_0075___i 51 GGCCGGCCGCAATAAGCTTTTTATTGAGCTGAAAAGAATGCCGGTCATTA 100
BSNT_00185___ 98 -TCATACACACGTTAAGAGTGTTTGACAGC-CACCGGCAGTGCGATAAA- 144
|||||||| |||..||||||||| || ||....|||||| |||
BPUM_0075___i 101 TTCATACAC----TAAAGGTGTTTGAC-GCTCATGCTCAGTGC---AAAC 142
BSNT_00185___ 145 --ATCATTTTGGTGATTAACGAGCAGGAGCGGGAGCACTTTCAGCAATTG 192
||.||..|.|.|||.||.||..|||||||..|..||||| .||..|
BPUM_0075___i 143 GCATGATCCTAGCGATCAATGAAGAGGAGCGTCAAGACTTT---GAAAGG 189
BSNT_00185___ 193 CT-------GTGCGATTACCCGTTTCAAAC------TTCAATTGAGCTTG 229
|| ||.| ||.|||||||||| |||| ||||
BPUM_0075___i 190 CTTCTCAAGGTAC----ACGCGTTTCAAACGCCTGTTTCA------CTTG 229
BSNT_00185___ 230 TTGCA--GGCGGAGAAGAGCGTCAGCACAGTGTGTA-TAAGG------GG 270
| || |||||.||.||.||||||||.|||||.|| .|||| ||
BPUM_0075___i 230 T--CAACGGCGGTGAGGAACGTCAGCAAAGTGTATACGAAGGATTAAAGG 277
BSNT_00185___ 271 C--TGAAAGCCGTAAAGCAGGAAAAGATTGTCCTTGTACATGACGGTGCC 318
| |||||| |.|||| |.||.||.|||||.|||||.||.||.
BPUM_0075___i 278 CTGTGAAAG-----ATGCAG----ACATCGTGCTTGTTCATGATGGGGCA 318
BSNT_00185___ 319 CGCCCATTTATAAAACATGAACAAATTGACGAACTGATC------GCAGA 362
.|.||.|||||.||.|||..|||.|||||| .||.|| ||||.
BPUM_0075___i 319 AGGCCTTTTATTAAGCATACACAGATTGAC---TTGCTCGTTAAAGCAGC 365
BSNT_00185___ 363 GGCGGAACAGACAGGAGCGGCCATCC-------TTGCTGTTCCGGTAAAA 405
|...|||.|| ||| ||| |.||.||.||.||.|||
BPUM_0075___i 366 GATTGAAAAG--------GGC--TCCGCGGTTGTAGCGGTACCAGTGAAA 405
BSNT_00185___ 406 GATACGATTAAACGCGTTCAAGATTTACAAGTC--AGTG----AGACGAT 449
||.||.||.||||||||||||| |||.| |||| |.||.||
BPUM_0075___i 406 GACACAATCAAACGCGTTCAAG------AAGGCAAAGTGGAACAAACCAT 449
BSNT_00185___ 450 TGAACGTTCA-AGCTTGTGGGCTGTCCAAACGCCACAAGCTTTTCGTCTT 498
|||||| ||| |||||||||||.|||||.||.||||||||||||||||.|
BPUM_0075___i 450 TGAACG-TCAGAGCTTGTGGGCAGTCCAGACCCCACAAGCTTTTCGTCAT 498
BSNT_00185___ 499 TCTTTATTGATGAAGGCTCACGCTGAGGCCGAGCGCAAGGGATTTTTAGG 548
|||.|.||.|...||||.||.|...|.||.|||||.|..||.||..|.||
BPUM_0075___i 499 TCTATTTTAAAAGAGGCGCATGAATATGCAGAGCGGACCGGTTTCCTTGG 548
BSNT_00185___ 549 GACGGATGACGCCAGCCTCGTTGAAC----AGATGG-----AGGGCGGTT 589
.||.||.||||||||.||.||.|||| |.|||| |
BPUM_0075___i 549 AACAGACGACGCCAGTCTTGTGGAACAATTACATGGTGAAAA-------- 590
BSNT_00185___ 590 CGGTCCGTG----TTGTAGAAGGCAG-CTATACAAATATTAAGCTGACGA 634
|||| ||||..|||| || .|||||.||||||||||||||||
BPUM_0075___i 591 -----CGTGTATATTGTCCAAGG-AGATTATACCAATATTAAGCTGACGA 634
BSNT_00185___ 635 CGCCAGACGATTT----GACGTCAGCTGAAGCTATCATGGAATCAGAAAG 680
|.||.||.||||| |..|.|| |.||.||.|||||..|.|||||
BPUM_0075___i 635 CACCGGATGATTTATTGGTTGCCA----AGGCAATTATGGATGCGGAAAG 680
BSNT_00185___ 681 TGGGAATAAACATGTTTAG 699
.|||.| .|||
BPUM_0075___i 681 AGGGTA---------CTAG 690
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