Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00193 and BPUM_0079

See Amino acid alignment / Visit BSNT_00193 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:07
# Commandline: needle
#    -asequence dna-align/BSNT_00193___cysS.1.24716.seq
#    -bsequence dna-align/BPUM_0079___cysS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00193___cysS-BPUM_0079___cysS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00193___cysS-BPUM_0079___cysS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00193___cysS
# 2: BPUM_0079___cysS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1451
# Identity:    1058/1451 (72.9%)
# Similarity:  1058/1451 (72.9%)
# Gaps:         100/1451 ( 6.9%)
# Score: 3821.0
# 
#
#=======================================

BSNT_00193___      1 ATGACAATCACACTTTATAATACATTGAC----TAGACAGAAGGAAACAT     46
                     ||||||||||...||||||||||||||||    .|||.|| ||||   ||
BPUM_0079___c      1 ATGACAATCAATATTTATAATACATTGACACGTAAGAAAG-AGGA---AT     46

BSNT_00193___     47 TCGTTCCTCTTGAAGAGGGAAAAGTGAAAATGTATGTATGCGGACCCACG     96
                     ||||.||.|||||....|||||.||.||.||||||||.||||||||.||.
BPUM_0079___c     47 TCGTCCCGCTTGAGCCAGGAAAGGTCAAGATGTATGTGTGCGGACCAACC     96

BSNT_00193___     97 GTTTACAATTACATTCATATCGGGAACGCGCGTCCGGCAATCGTTTACGA    146
                     |||||.||.|||||||||||||||||.||..|.||.||.||.|||||.||
BPUM_0079___c     97 GTTTATAACTACATTCATATCGGGAATGCAAGACCTGCTATTGTTTATGA    146

BSNT_00193___    147 TACGGTTCGAAACTATTTAGAGTATAAAGGCTATGATGTGCAGTATGTCT    196
                     .||.||.||.||.||||||||.||.|..||||||||||||.|.|.|||||
BPUM_0079___c    147 CACTGTACGTAAGTATTTAGAATACAGCGGCTATGATGTGAACTTTGTCT    196

BSNT_00193___    197 CTAACTTCACAGACGTAGACGATAAATTAATTAAAGCGGCAAATGAACTC    246
                     |.|||||.|||||.||.||.||||||.|.||.|||||.||.|||||||||
BPUM_0079___c    197 CAAACTTTACAGATGTGGATGATAAACTCATCAAAGCAGCCAATGAACTC    246

BSNT_00193___    247 GGTGAGGATGTACCCACCATTTCAGAGCGTTTTATTAAAGCATACTTTGA    296
                     ||.||.|||||.||.||.|||.|.||.||.|||||..||||.||||||||
BPUM_0079___c    247 GGAGAAGATGTTCCGACGATTGCTGACCGCTTTATCCAAGCCTACTTTGA    296

BSNT_00193___    297 AGACGTAGGTGCGCTCGGCTGCCGAAAAGCCGACCTTCATCCGCGAGTAA    346
                     ||||||..||||.||.||.|||..||||||.||.|||||.||.||.||.|
BPUM_0079___c    297 AGACGTCAGTGCACTAGGTTGCAAAAAAGCTGATCTTCACCCACGCGTGA    346

BSNT_00193___    347 TGGAGAACATGGATGCCATTATCGAATTCGTAGATCAGCTCGTGA-----    391
                     .|||.||.|||||||..||.||.|.|||..|.||         ||     
BPUM_0079___c    347 CGGAAAATATGGATGATATCATTGCATTTATTGA---------GACATTA    387

BSNT_00193___    392 ----AAAAGGGCTACGCATATGAATCAGAAGGTGACGTATATTTCAAAAC    437
                         |||||||||||||.||||||.||||.||||||||.||||.||..||
BPUM_0079___c    388 ATAGAAAAGGGCTACGCCTATGAAGCAGATGGTGACGTGTATTACAGCAC    437

BSNT_00193___    438 CAGAGCGTTTGAAGGGTACGGAAAGCTTTCTCAGCAATCAATCGATGAAC    487
                     ..|..|.||||||||.|||||||||||||||||.||.||.||.|||||||
BPUM_0079___c    438 ACGCTCATTTGAAGGCTACGGAAAGCTTTCTCACCAGTCGATTGATGAAC    487

BSNT_00193___    488 T-AAGATCAGGTGCACGCATCCGGGTCGGCGAGAAAAAAGAAGATGCTCT    536
                     | |||| |||||||.||.||.||.||.||.|||||.|||..||||||.||
BPUM_0079___c    488 TGAAGA-CAGGTGCCCGTATTCGTGTAGGTGAGAAGAAACGAGATGCGCT    536

BSNT_00193___    537 TGATTTCGCACTGTGGAAAGCGGCAAAAGAA-GGAGAAATCTCTTGGGAT    585
                     .||.||.||..|.|||||.||.|| |||||| ..|||||||||.||||||
BPUM_0079___c    537 GGACTTTGCTTTATGGAAGGCTGC-AAAGAACCAAGAAATCTCATGGGAT    585

BSNT_00193___    586 AGCCCTTGGGGGAAAGGACGTCCGGGCTGGCACATTGAATGCTCAGCAAT    635
                     |||||.|||||..||||||||||.||||||||||||||||||||.||.||
BPUM_0079___c    586 AGCCCGTGGGGCGAAGGACGTCCAGGCTGGCACATTGAATGCTCGGCCAT    635

BSNT_00193___    636 GGTGAAAAAGTATCTCGGTGA-CCAGATTGATATCCATGCGGGCGGACAG    684
                     |||.|||||.|||.|.||||| .|| ||.|||||.|||||.|||||||||
BPUM_0079___c    636 GGTTAAAAAATATTTAGGTGATACA-ATCGATATTCATGCAGGCGGACAG    684

BSNT_00193___    685 GATTTAACATTCCCTCACCATGAAAACGAAATTGCGCAATCTGAGGCGCT    734
                     ||||||||.|||||||||||||||||.|||||.||.|||||||||||..|
BPUM_0079___c    685 GATTTAACCTTCCCTCACCATGAAAATGAAATCGCTCAATCTGAGGCTTT    734

BSNT_00193___    735 GACAGGCAAAACGTTTGCGAAGTACTGGCTTCATAATGGTTATATCAATA    784
                     ||||||||||.|.||||||||.||.|||.|.|||||.||.|||||.||||
BPUM_0079___c    735 GACAGGCAAACCATTTGCGAAATATTGGATGCATAACGGATATATTAATA    784

BSNT_00193___    785 TTGATAATGAAAAAATGTCAAAATCACTAGGCAACTTTGTGCTTGTCCAT    834
                     ||||.|||||.|||||||||||||||||.|||||||||||||||||.|||
BPUM_0079___c    785 TTGAGAATGAGAAAATGTCAAAATCACTTGGCAACTTTGTGCTTGTGCAT    834

BSNT_00193___    835 GACATCATTAAACAGCATGATCCGCA---GCTTTTGAGATTCTTTATGCT    881
                     |||||..|.|||.|.||.|||||..|   ||||   .|||||||||||.|
BPUM_0079___c    835 GACATTGTAAAAGAACAAGATCCTGATGTGCTT---CGATTCTTTATGTT    881

BSNT_00193___    882 ATCTGTTCATTATCGCCATCCGATTAACTATTCAGAAGAGCTTCTGGAGA    931
                     .||.|||||.||.||.|||||.||||||||.|||...||..|.||.||||
BPUM_0079___c    882 GTCGGTTCACTACCGTCATCCAATTAACTACTCAATGGATTTACTAGAGA    931

BSNT_00193___    932 ATACGAAAAGCGCGTTCAACCGCTTAAAAACAGCGTACAGC-AATCTTCA    980
                     .|||.||.||.|||||.|||||..|.|||||..|.|| .|| |||.|.||
BPUM_0079___c    932 GTACAAAGAGTGCGTTTAACCGACTCAAAACGTCTTA-TGCTAATTTACA    980

BSNT_00193___    981 GCACCGTCTTAACAGCAGTACGAATTTAACCGAAGATGACGATCAATGGC   1030
                     .||.||.|||.|.|||||.||||||.|.||.|||||..|.|.|.|||||.
BPUM_0079___c    981 TCATCGCCTTGAAAGCAGCACGAATATCACAGAAGACAATGCTAAATGGT   1030

BSNT_00193___   1031 TTGAAAAAGTTGAAGAACACCGCAAAG-----CATT------CGAAGAAG   1069
                     |.|..||.||||||||     |||.||     ||||      .|||    
BPUM_0079___c   1031 TGGCGAAGGTTGAAGA-----GCAGAGAGCGACATTTATTTCTGAA----   1071

BSNT_00193___   1070 CGATGGACGATGATTTTAATACGGCGAATGCCATTTCAGTCTTGTTTG-A   1118
                       |||.|.|||||.||.||||||||.|||||.|||||.||.||.||.| |
BPUM_0079___c   1072 --ATGAATGATGACTTCAATACGGCAAATGCGATTTCTGTTTTATTCGAA   1119

BSNT_00193___   1119 CTTAGCGAAACACGCCAATTATTATCTTCAGAAAGATCATACGGCTGATC   1168
                     ||| ||||||||.||.|||||||||.|..|.||.||||||||..|.||..
BPUM_0079___c   1120 CTT-GCGAAACAGGCGAATTATTATATGGAAAATGATCATACTTCGGAGG   1168

BSNT_00193___   1169 ATGTGATTACGGCGTTTATTGAGATGTTTGACCGCATTGTT---------   1209
                     |.|||||.|.|||.|||||             ||..|||||         
BPUM_0079___c   1169 AAGTGATCAAGGCATTTAT-------------CGGCTTGTTCCAAGAAAT   1205

BSNT_00193___   1210 ----TCTGTCCTCGGTTTTTCGTTGGGTGAGCAGGAA--CTT---CTCGA   1250
                         ||||||||.||.||.||.||     ||.||.||  |.|   ||.||
BPUM_0079___c   1206 CACGTCTGTCCTTGGCTTCTCATT-----AGAAGAAAAGCATACGCTTGA   1250

BSNT_00193___   1251 TCAAGAGATTGAAGACTTAATCGAAAAGCGAAATGAAGCGCGCCGGAATC   1300
                     ..||||..|.||||..|||||.|||.|.||.|||||.||..|..|.||||
BPUM_0079___c   1251 AAAAGAAGTAGAAGCGTTAATTGAACAACGCAATGAGGCTAGAAGAAATC   1300

BSNT_00193___   1301 GCGATTTTGCATTGTCAGACCAGATCCGCGACCAGCTGAAAAGCATGAAT   1350
                     |.||||||||..|.||.||.||.||.||.||||||.|.||.|||||||||
BPUM_0079___c   1301 GTGATTTTGCGCTATCTGATCAAATTCGTGACCAGTTAAAGAGCATGAAT   1350

BSNT_00193___   1351 ATCATTCTTGAAGATACGGCTCAAGGCACTCGCTGGAAACGGGGAGAATA   1400
                     ||..|..|.||.||.||..|||||||.||||||||||||.|.||||||||
BPUM_0079___c   1351 ATTGTATTGGAGGACACTCCTCAAGGTACTCGCTGGAAAAGAGGAGAATA   1400

BSNT_00193___   1401 A   1401
                     .
BPUM_0079___c   1401 G   1401


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