Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00194 and BPUM_0080

See Amino acid alignment / Visit BSNT_00194 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:07
# Commandline: needle
#    -asequence dna-align/BSNT_00194___yazC.1.24716.seq
#    -bsequence dna-align/BPUM_0080___yazC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00194___yazC-BPUM_0080___yazC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00194___yazC-BPUM_0080___yazC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00194___yazC
# 2: BPUM_0080___yazC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 443
# Identity:     334/443 (75.4%)
# Similarity:   334/443 (75.4%)
# Gaps:          22/443 ( 5.0%)
# Score: 1206.5
# 
#
#=======================================

BSNT_00194___      1 ATGCTTGAA-TTTGATACGATAAAAGATTCTAAGCAGCTTAACGGTCTTG     49
                     ||| ||||| |||||.|.|.|.|||||...|||.||..|.|||||.||||
BPUM_0080___y      1 ATG-TTGAATTTTGAAAAGCTGAAAGACGGTAAACAATTGAACGGACTTG     49

BSNT_00194___     50 CGCTTGCTTATATAGGTGATGCCATTTTTGAAGTGTATGTCAGGCATCAC     99
                     |||||||||||||.||||||||||||||||||||.||.||.|||||||||
BPUM_0080___y     50 CGCTTGCTTATATGGGTGATGCCATTTTTGAAGTCTACGTGAGGCATCAC     99

BSNT_00194___    100 CTGCT--TAAGCAGGGCTTTACCAAACCAAATGATCTTCATAAGAAATCA    147
                     ||.||  .||...||||  .||.|||||||||||.||.||.||...|.||
BPUM_0080___y    100 CTCCTCCAAACGGGGGC--GACAAAACCAAATGAGCTGCACAAACGAGCA    147

BSNT_00194___    148 AGCCGGATTGTTTCAGCAAAGTCACAGGCTGAGATCCTATTTTTT-----    192
                     |||...||.||||||||.||.||.|||||.|     |||||||.|     
BPUM_0080___y    148 AGCAAAATCGTTTCAGCTAAATCTCAGGCAG-----CTATTTTATTTACG    192

BSNT_00194___    193 CTGCAGAATCAATCATTTTTTACGGAAGAAGAGGAAGCGGTGCTGAAAAG    242
                     ||.|||.|.|||...|||||.||.||||.|||.|||||||||||||||||
BPUM_0080___y    193 CTTCAGCAGCAAGGCTTTTTCACTGAAGCAGAAGAAGCGGTGCTGAAAAG    242

BSNT_00194___    243 AGGCAGAAATGCCAAGTCAGGGACAACACCTAAAAATACAGATGTTCAGA    292
                     |||.||||||||.||.|||||.|||...||||||||.|||||.|||||.|
BPUM_0080___y    243 AGGAAGAAATGCAAAATCAGGCACAGTGCCTAAAAACACAGACGTTCAAA    292

BSNT_00194___    293 CGTACCGCTACAGTACAGCATTTGAAGCGCTTCTGGGCTACCTTTTTCTA    342
                     ||||.||.||.|||||.||.|||||||||||..||||.||..|.|||.|.
BPUM_0080___y    293 CGTATCGTTATAGTACGGCGTTTGAAGCGCTCATGGGTTATTTATTTATT    342

BSNT_00194___    343 GAGAAAAAAGAGGAACGACTTAG-TCAGCTCG--TAGCCGAAGCTATACA    389
                     ||.||..|.||.||||| ||||| ..|||| |  |||.| |.||.||..|
BPUM_0080___y    343 GATAAGCAGGACGAACG-CTTAGAAGAGCT-GATTAGTC-AGGCGATTGA    389

BSNT_00194___    390 ATTCGGGACGTCAGGGAGGAAAACAAATGAGTCAGCAACATGA    432
                     |.||||.||||||||||||||.|||||||||||||||||||||
BPUM_0080___y    390 AATCGGAACGTCAGGGAGGAAGACAAATGAGTCAGCAACATGA    432


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.