Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00197 and BPUM_0083

See Amino acid alignment / Visit BSNT_00197 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:07
# Commandline: needle
#    -asequence dna-align/BSNT_00197___sigH.1.24716.seq
#    -bsequence dna-align/BPUM_0083___sigH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00197___sigH-BPUM_0083___sigH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00197___sigH-BPUM_0083___sigH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00197___sigH
# 2: BPUM_0083___sigH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 659
# Identity:     526/659 (79.8%)
# Similarity:   526/659 (79.8%)
# Gaps:           4/659 ( 0.6%)
# Score: 2074.0
# 
#
#=======================================

BSNT_00197___      1 GTGAATCTACAGAACAACAAGGGAAAATTCAACAAAGAGCAGTTTTGCCA     50
                     |||||||||.|.||||.|||||..||||.||.||.||||||.||||||||
BPUM_0083___s      1 GTGAATCTAAACAACAGCAAGGATAAATCCATCAGAGAGCAATTTTGCCA     50

BSNT_00197___     51 GTTGGAGGACGAGCAGGTCATTGAAAAGGTTCATGTTGGGGACAGTGATG    100
                     ||||||.||.||.||.||||||||||.|||||||||.||.||.|||||||
BPUM_0083___s     51 GTTGGAAGATGAACAAGTCATTGAAAGGGTTCATGTCGGAGATAGTGATG    100

BSNT_00197___    101 CGTTAGATTACTTGATTACGAAGTACCGAAACTTTGTTCGGGCAAAAGCA    150
                     ||.||||||||||.||.|||||.||||||||.|||||.||.|||||||||
BPUM_0083___s    101 CGCTAGATTACTTAATAACGAAATACCGAAATTTTGTACGTGCAAAAGCA    150

BSNT_00197___    151 AGATCCTATTTCTTAATAGGGGCGGACAGAGAGGATATTGTTCAGGAAGG    200
                     |||||.||||||||.||.||.|||||..|||||||.|||||.||.||.||
BPUM_0083___s    151 AGATCTTATTTCTTGATTGGAGCGGATCGAGAGGACATTGTCCAAGAGGG    200

BSNT_00197___    201 CATGATAGGCCTCTATAAGTCTATTCGTGACTTCAAAGAGGACAAGCTTA    250
                     .|||||.||.||.|||||||||||.||.||.||||.||||||||||||||
BPUM_0083___s    201 GATGATCGGACTTTATAAGTCTATCCGCGATTTCAGAGAGGACAAGCTTA    250

BSNT_00197___    251 CCTCATTCAAAGCTTTCGCAGAATTATGTATTACCCGCCAAATTATTACC    300
                     |.|||||.||.|||||.|||||||||||||||||||||||||||||.|||
BPUM_0083___s    251 CTTCATTTAAGGCTTTTGCAGAATTATGTATTACCCGCCAAATTATCACC    300

BSNT_00197___    301 GCAATAAAGACAGCTACTCGCCAGAAACACATTCCTTTGAATTCCTACGT    350
                     |||||.||.||||||||||||||.|||||.||.||.||.||||||||.||
BPUM_0083___s    301 GCAATTAAAACAGCTACTCGCCAAAAACATATCCCGTTAAATTCCTATGT    350

BSNT_00197___    351 CTCATTAGATAAACCGATTTTTGATGAAGAATCAGACCGAACGCTGCTGG    400
                     .|||||||||||.||.||.|.||||||||||||||||.||||..||.|||
BPUM_0083___s    351 ATCATTAGATAAGCCAATATATGATGAAGAATCAGACAGAACATTGTTGG    400

BSNT_00197___    401 ATGTCATTTCAGGAGCGAAAAC-CTTAAATCCTGAGGAAATGATCATTAA    449
                     |.||||||||.||.||.|||.| ||| ||.||.||.||..|.|||||||.
BPUM_0083___s    401 ACGTCATTTCCGGTGCTAAAGCGCTT-AACCCAGAAGATTTAATCATTAG    449

BSNT_00197___    450 TCAGGAAGAATTTGATGATATTGAAATGAAAATGGGAGAACTATTAAGTG    499
                     ..|.|||||||||||||||||.||||||||.|||||.||||||.||||.|
BPUM_0083___s    450 CAAAGAAGAATTTGATGATATCGAAATGAAGATGGGTGAACTACTAAGCG    499

BSNT_00197___    500 ATTTAGAGAGAAAAGTACTCGT-CTTATATCTCGACGGGAGAAGTTACCA    548
                     |..|.||.|||||.||.||.|| ||| ||.||.||.||.|||...||.||
BPUM_0083___s    500 AGCTGGAAAGAAAGGTTCTTGTGCTT-TACCTTGATGGCAGATCCTATCA    548

BSNT_00197___    549 AGAGATTTCTGATGAACTGAACCGACATGTGAAATCGATCGACAATGCCC    598
                     ||||||||||||.||..|.|||||.|||||||||||.||.||.||.||.|
BPUM_0083___s    549 AGAGATTTCTGAAGATTTAAACCGTCATGTGAAATCAATTGATAACGCAC    598

BSNT_00197___    599 TTCAGCGTGTGAAACGCAAGCTGGAGAAGTACTTGGAAATTCGCGAAATC    648
                     |.||..|.||.||..|.||..|.|||||.||.||.||..|||||||.||.
BPUM_0083___s    599 TCCAAAGAGTAAAGAGAAAATTAGAGAAATATTTAGAGCTTCGCGAGATT    648

BSNT_00197___    649 AGTTTGTAA    657
                     |||.|.|||
BPUM_0083___s    649 AGTCTCTAA    657


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