Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00205 and BPUM_0089

See Amino acid alignment / Visit BSNT_00205 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:08
# Commandline: needle
#    -asequence dna-align/BSNT_00205___rplJ.1.24716.seq
#    -bsequence dna-align/BPUM_0089___rplJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00205___rplJ-BPUM_0089___rplJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00205___rplJ-BPUM_0089___rplJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00205___rplJ
# 2: BPUM_0089___rplJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 501
# Identity:     412/501 (82.2%)
# Similarity:   412/501 (82.2%)
# Gaps:           0/501 ( 0.0%)
# Score: 1704.0
# 
#
#=======================================

BSNT_00205___      1 ATGAGCAGCGCAATTGAAACAAAAAAAGTTGTTGTTGAAGAAATTGCTTC     50
                     |||||||..|||||.||.||||||||||||||.|||||.||||||.||||
BPUM_0089___r      1 ATGAGCAATGCAATCGATACAAAAAAAGTTGTCGTTGATGAAATTACTTC     50

BSNT_00205___     51 TAAACTGAAAGAAAGTAAATCAACGATCATCGTTGACTATCGCGGACTTA    100
                     ||||.|.|||||.||.|..||.||..||||.||.||.||.|||||.|||.
BPUM_0089___r     51 TAAATTCAAAGATAGCATGTCTACTGTCATTGTAGATTACCGCGGTCTTT    100

BSNT_00205___    101 ACGTTTCTGAAGTAACTGAACTTCGTAAACAGCTTCGCGAAGCTAACGTT    150
                     ..|||||||||||.|||||||||||||||||.|||||.||.|||..|||.
BPUM_0089___r    101 CAGTTTCTGAAGTGACTGAACTTCGTAAACAACTTCGTGACGCTGGCGTA    150

BSNT_00205___    151 GAGTTCAAAGTTTACAAAAATACGATGACTCGCCGTGCGGTTGAACAAGC    200
                     ||.|||||||||||||||||.||..|||||||||||||.||||||||||.
BPUM_0089___r    151 GAATTCAAAGTTTACAAAAACACTTTGACTCGCCGTGCAGTTGAACAAGT    200

BSNT_00205___    201 TGAGCTTAATGGTTTGAATGATTTCTTAACTGGACCGAACGCGATCGCAT    250
                     |||.||.|..|||||.||.|||||||||||.||.||.|||||.|||||||
BPUM_0089___r    201 TGAACTAACAGGTTTAAACGATTTCTTAACAGGTCCAAACGCTATCGCAT    250

BSNT_00205___    251 TCAGCACTGAAGATGTTGTCGCTCCGGCTAAAGTTCTTAATGACTTCGCT    300
                     ||||.|..|||||||||.||||.||.||.|||.|..|.||.||.||.||.
BPUM_0089___r    251 TCAGTAACGAAGATGTTATCGCACCTGCGAAAATCATCAACGAATTTGCG    300

BSNT_00205___    301 AAAAATCACGAAGCTCTTGAAATCAAAGCTGGCGTTATCGAAGGTAAAGT    350
                     ||||..|||||||||.|.||||||||||||||.||.||||||||.||.||
BPUM_0089___r    301 AAAAGCCACGAAGCTTTAGAAATCAAAGCTGGTGTCATCGAAGGAAACGT    350

BSNT_00205___    351 TTCTACTGTTGAAGAAGTGAAAGCTCTTGCTGAACTTCCATCACGCGAAG    400
                     ..|.|||||.|||||||||||.||||||||.||||||||.||.|||||||
BPUM_0089___r    351 AGCGACTGTAGAAGAAGTGAAGGCTCTTGCGGAACTTCCGTCTCGCGAAG    400

BSNT_00205___    401 GCTTGCTTTCTATGTTGCTTAGCGTACTTCAAGCTCCAGTTCGCAACCTT    450
                     ||||.||.|||||||||||||||||.|||||||||||||||||.||||||
BPUM_0089___r    401 GCTTACTATCTATGTTGCTTAGCGTTCTTCAAGCTCCAGTTCGTAACCTT    450

BSNT_00205___    451 GCTTTTGCTGCAAAAGCTGTGGCAGAACAAAAGGAAGAACAAGGCGCTTA    500
                     |||.|||||.|.|||||.||.|||||.|||||.|||||||||||||||||
BPUM_0089___r    451 GCTCTTGCTACTAAAGCAGTTGCAGATCAAAAAGAAGAACAAGGCGCTTA    500

BSNT_00205___    501 A    501
                     |
BPUM_0089___r    501 A    501


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.