Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00207 and BPUM_0091
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:08
# Commandline: needle
# -asequence dna-align/BSNT_00207___ybxB.1.24716.seq
# -bsequence dna-align/BPUM_0091___ybxB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00207___ybxB-BPUM_0091___ybxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00207___ybxB-BPUM_0091___ybxB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00207___ybxB
# 2: BPUM_0091___ybxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 646
# Identity: 447/646 (69.2%)
# Similarity: 447/646 (69.2%)
# Gaps: 80/646 (12.4%)
# Score: 1538.5
#
#
#=======================================
BSNT_00207___ 1 ATGAGTGAGCACTATTATTCAGAAAAACCTTCAGTGAAAAGCAACAAGCA 50
||||||||.|||||||||.|.|||||.||.||||||||||||||.||.||
BPUM_0091___y 1 ATGAGTGACCACTATTATACGGAAAAGCCATCAGTGAAAAGCAATAAACA 50
BSNT_00207___ 51 AACCTGGTCTTTTAGGCTTC----GGAATAA----AGATTTCACGTTTAC 92
.||.||| |.|||| .||..|| |..||| ||.|||||
BPUM_0091___y 51 GACATGG-------GACTTCACCTTGAGAAACCGTACCTTT-ACTTTTAC 92
BSNT_00207___ 93 CAGCGACAGCGGGGTTTTTTCTAAAAAAGAAGTTGATTTCGGCTCCCGCC 142
.||.|||||.||.||.||||||||.||||||||.||.||.||.||..|.|
BPUM_0091___y 93 AAGTGACAGTGGAGTGTTTTCTAAGAAAGAAGTCGACTTTGGTTCGAGGC 142
BSNT_00207___ 143 TGCTGATTGATTCTTTTGAAGAGCCTGAGGTTGAGGGCAGCT-TTTTGGA 191
|..|.|||||..||||||||||.|||||.||.||.||| |.| |.||.||
BPUM_0091___y 143 TTTTAATTGAAGCTTTTGAAGAACCTGACGTGGATGGC-GATGTCTTAGA 191
BSNT_00207___ 192 TGTAGGCTGCGGGTACGGCCCGATTGGTTTATCGCTGGCCAGCGACTTTA 241
|||.||.|||||.||.||.||||||||.||||||.|.||.|.||| |
BPUM_0091___y 192 TGTCGGTTGCGGTTATGGACCGATTGGCTTATCGTTAGCAAACGA----A 237
BSNT_00207___ 242 AAGA----CCGGACTATCCACATGATTGACGTTAATGAGAGAGCCGTAGA 287
|.|| |||.||.||.||.||||||||.||.||.||.|||||.||.||
BPUM_0091___y 238 ATGACGAGCCGCACCATTCATATGATTGATGTGAACGAAAGAGCAGTCGA 287
BSNT_00207___ 288 ACTATCAAATGAAAATGCGGAACA-AAACGGAATAACAAATGTTAAGATT 336
|||.|||||.|||||.||..|||| ||.||.|.|.| .|||||....|||
BPUM_0091___y 288 ACTTTCAAAGGAAAACGCTAAACATAATCGCATTGA-TAATGTCCGCATT 336
BSNT_00207___ 337 TATCAAAGCGATTTGTTTTCAAACATTGATT------CTGCTCAAACATT 380
||||||||.||||||||.||.||..||.||| ||||| ||
BPUM_0091___y 337 TATCAAAGTGATTTGTTCTCGAATGTTCATTCATCAGCTGCT------TT 380
BSNT_00207___ 381 TGCTTCTATTCTTACAAATCCCCCAATCCGAGCCGGAAAAAAAGTTGTCC 430
|||.|||||.||.||.|||||||||||.||.||.||.||.||||||||.|
BPUM_0091___y 381 TGCCTCTATACTGACCAATCCCCCAATACGGGCAGGGAAGAAAGTTGTAC 430
BSNT_00207___ 431 ATGCTATCTTTGAGAAAAGCGCTGAACACTTAAAAGCTT-----CAGGTG 475
||||.||||||||.|||||.|||||.||.||| || .|||||
BPUM_0091___y 431 ATGCGATCTTTGATAAAAGTGCTGATCATTTA-----TTGCCGGAAGGTG 475
BSNT_00207___ 476 AATTGTGGATCGTCATACAGAAAAAGCAGGGCGCGCCTTCTGCCATTGA- 524
|.||||||.|.||.||.||||||||||||||.|..||.|||||.|||||
BPUM_0091___y 476 AGTTGTGGGTGGTAATTCAGAAAAAGCAGGGTGGACCATCTGCGATTGAG 525
BSNT_00207___ 525 AAAGCTCGAGGAACTGTTCGATGAGGTTTCT------GTCG--------T 560
||| ||.||..||.|||.| |||| |
BPUM_0091___y 526 AAA-------------TTAGAACAGCTTTTTGGAGAAGTCGAAGTTGTAT 562
BSNT_00207___ 561 TCAAAAAAAGAAAGGCTATTATATCATAAAAGCAAAAAAAGTTTGA 606
|.|||||| ||.|||||.|||||.||.|||||.||||||||||||
BPUM_0091___y 563 TGAAAAAA--AAGGGCTACTATATTATCAAAGCTAAAAAAGTTTGA 606
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