Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00234 and BPUM_0116

See Amino acid alignment / Visit BSNT_00234 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:11
# Commandline: needle
#    -asequence dna-align/BSNT_00234___rpsH.1.24716.seq
#    -bsequence dna-align/BPUM_0116___rpsH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00234___rpsH-BPUM_0116___rpsH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00234___rpsH-BPUM_0116___rpsH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00234___rpsH
# 2: BPUM_0116___rpsH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 399
# Identity:     354/399 (88.7%)
# Similarity:   354/399 (88.7%)
# Gaps:           0/399 ( 0.0%)
# Score: 1590.0
# 
#
#=======================================

BSNT_00234___      1 ATGGTTATGACAGATCCAATTGCAGATATGCTAACTCGTATTCGCAATGC     50
                     |||||||||||||||||.|||||||||.||||.|||||||||||||||||
BPUM_0116___r      1 ATGGTTATGACAGATCCGATTGCAGATTTGCTGACTCGTATTCGCAATGC     50

BSNT_00234___     51 AAACATGGTACGTCATGAGAAGCTTGAAATTCCTGCTTCTAAATTGAAAA    100
                     .|||||||||||||||||||||||.|||.|.||.|||||.|||.|.||||
BPUM_0116___r     51 GAACATGGTACGTCATGAGAAGCTAGAAGTACCGGCTTCAAAAATCAAAA    100

BSNT_00234___    101 GAGAAATTGCTGAAATTTTAAAGCGTGAAGGTTTCATTCGTGACGTTGAG    150
                     ||||||||||||||||.|||||||||||||||||.||.|||||||||||.
BPUM_0116___r    101 GAGAAATTGCTGAAATCTTAAAGCGTGAAGGTTTTATCCGTGACGTTGAA    150

BSNT_00234___    151 TTCGTAGAAGACAGCAAACAAGGTATTATCCGCGTTTTCTTGAAATACGG    200
                     |..||.|||||||||||||||||.||||||||..|.|||.|.|||||.||
BPUM_0116___r    151 TATGTTGAAGACAGCAAACAAGGAATTATCCGTATGTTCCTTAAATATGG    200

BSNT_00234___    201 ACAAAACAACGAGCGCGTTATCACTGGTCTTAAAAGAATCAGCAAGCCTG    250
                     .|||||||||||.||.||||||||||||||.|||||||||||.||.||||
BPUM_0116___r    201 CCAAAACAACGAACGTGTTATCACTGGTCTAAAAAGAATCAGTAAACCTG    250

BSNT_00234___    251 GTTTGCGTGTTTATGCTAAATCTAATGAAGTACCTCGCGTACTTAACGGT    300
                     ||||.|||||.|||||.|||||.|||||||||||.||.|||||||||||.
BPUM_0116___r    251 GTTTACGTGTATATGCGAAATCAAATGAAGTACCACGTGTACTTAACGGA    300

BSNT_00234___    301 CTTGGAATCGCGATTATTTCTACATCACAAGGTGTTTTAACGGACAAAGA    350
                     |||||||||||.|||||||||||||||||||||||||||.||||||||||
BPUM_0116___r    301 CTTGGAATCGCAATTATTTCTACATCACAAGGTGTTTTATCGGACAAAGA    350

BSNT_00234___    351 AGCCCGTGCAAAACAAGCTGGTGGAGAAGTTCTAGCATACGTTTGGTAA    399
                     |||||||||.||||||||||||||||||||.||.||.|||||.||||||
BPUM_0116___r    351 AGCCCGTGCTAAACAAGCTGGTGGAGAAGTACTTGCTTACGTATGGTAA    399


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