Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00251 and BPUM_0133
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:12
# Commandline: needle
# -asequence dna-align/BSNT_00251___ybaE.1.24716.seq
# -bsequence dna-align/BPUM_0133___cbiO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00251___ybaE-BPUM_0133___cbiO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00251___ybaE-BPUM_0133___cbiO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00251___ybaE
# 2: BPUM_0133___cbiO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 913
# Identity: 595/913 (65.2%)
# Similarity: 595/913 (65.2%)
# Gaps: 125/913 (13.7%)
# Score: 1998.5
#
#
#=======================================
BSNT_00251___ 1 ---------------------------------------ATGAAGACGCC 11
|||||.|||||
BPUM_0133___c 1 ATGGACATTACGATCAAAGAATTAGAGCATCGTTATCAAATGAAAACGCC 50
BSNT_00251___ 12 GTTTGAGCGCCTAGCACTGTATGATATCAATGCATCGATTAAAGAAGGAA 61
|||||||||.||.||..||||||||.|||||||.||.||..||||.||.|
BPUM_0133___c 51 GTTTGAGCGTCTCGCTTTGTATGATGTCAATGCTTCCATCCAAGAGGGCA 100
BSNT_00251___ 62 GCTACGTAGCCGTTATCGGGCATACAGGCTCTGGCAAGTCCACTCTTCTT 111
||||.||.||.||.||.||.|||||||||||||||||||||||..|.||.
BPUM_0133___c 101 GCTATGTCGCTGTCATTGGTCATACAGGCTCTGGCAAGTCCACGTTGCTG 150
BSNT_00251___ 112 CAGCACCTAAATGGTCTCCTGAAGCCGACGAAGGGACAG-ATATCACTAG 160
|||||..|||||||..|.||.||.||.|||||||| .|| ||..|.||.|
BPUM_0133___c 151 CAGCATTTAAATGGCTTGCTCAAACCAACGAAGGG-GAGCATTGCGCTTG 199
BSNT_00251___ 161 GCAGCACTGTCATTCAGGCAGGGAAAAAGAATAAAGATCTGAAAAAA--- 207
|....||.|||.|.||.||....||||||.|.||.|||.| |||
BPUM_0133___c 200 GGGATACCGTCTTACAAGCCAATAAAAAGCAGAAGGATTT----AAAGTC 245
BSNT_00251___ 208 -CTTCGTAAAAAAGTCGGAATCGTTTTCCAATTTCCTGAGCATCAATTAT 256
|||||.||||||||.||.|||||.||.||.||||||||||||||..|.|
BPUM_0133___c 246 CCTTCGGAAAAAAGTAGGCATCGTGTTTCAGTTTCCTGAGCATCAGCTTT 295
BSNT_00251___ 257 TCGAAGAAACAGTTCTTAAAGATATTTCATTCGGACCGATGAACTTTGGT 306
|.||||||||..|.|||||.|||||.|..||.||.||||||||.||.|||
BPUM_0133___c 296 TTGAAGAAACGATCCTTAAGGATATCTGCTTTGGTCCGATGAATTTCGGT 345
BSNT_00251___ 307 GTT--AAAAAAGAAGATGCGGAACAAAAAGCGAGAGAGATGCTGCAGCTT 354
||| ..|..||||| ||.|||..|||.||||.|||.||||||.|.||.
BPUM_0133___c 346 GTTCCTCAGCAGAAG--GCAGAAGCAAAGGCGAAAGAAATGCTGAAACTA 393
BSNT_00251___ 355 GTAGGT------------TTATCAGAAGAGCTTTTGGACAGGTCACCCTT 392
||.||| ||||.| |.|.|| ||.||.||
BPUM_0133___c 394 GTTGGTCTTCCTGAATCCTTATTA--------TCTCGA----TCTCCTTT 431
BSNT_00251___ 393 TGAATTAAGCGGGGGACAAATGCGCAGAGTTGCAATTGCCGGCGTACTTG 442
||||.||||.||.||.||||||.|..|.||.||.|||||.||.||.||.|
BPUM_0133___c 432 TGAACTAAGTGGCGGTCAAATGAGACGTGTGGCGATTGCAGGTGTTCTAG 481
BSNT_00251___ 443 CAATGGACCCTGAAGTGCTTGTTCTGGATGAACCGACTGCAGGATTGGAC 492
|.|||||.||.|||||||||||.||||||||.|||||||||||.||.||.
BPUM_0133___c 482 CGATGGAGCCAGAAGTGCTTGTGCTGGATGAGCCGACTGCAGGGTTAGAT 531
BSNT_00251___ 493 CCAAGAGGGCGAAAAGAGATTATGGACATGTTTTATGAGCTTCATCAACG 542
|||.|.||.||.||.||.||.|||||||||||.|||||||||||||||..
BPUM_0133___c 532 CCACGCGGACGGAAGGAAATCATGGACATGTTCTATGAGCTTCATCAAAA 581
BSNT_00251___ 543 CGGGAACCTGACGACGATCCTTGTGACACACAGCATGGAGGATGCAGCTG 592
.|..||.||.||.|||||.||.||.||||||||.|||||||||||.|||
BPUM_0133___c 582 GGCTAATCTCACCACGATTCTGGTTACACACAGTATGGAGGATGCCGCT- 630
BSNT_00251___ 593 CA-TACGCTGATGAAATGATTGTTATGCATAAAGGAACGATACAAGCATC 641
|| ||.||.|||.||||||||||.|||||||||||||||.|..|.||..|
BPUM_0133___c 631 CATTATGCAGATCAAATGATTGTGATGCATAAAGGAACGGTGAAGGCGAC 680
BSNT_00251___ 642 AGGCAGTCCGCGTGATCTGTTTTTAAAGGGTGAAGAGATGGCCGGCTGGG 691
|||||..|||.|.||..|||||...||..||..|||.|||.|....|..|
BPUM_0133___c 681 AGGCACGCCGAGAGAATTGTTTGCCAATCGTACAGACATGTCTTCATTTG 730
BSNT_00251___ 692 GGCTGGATCTTCCTGAAACAATAAAATTCCA-AAGACACCTTGAAGCTGT 740
|.||.||.||.||.|||||.||.|||||||| .|||| ..|.||||..|.
BPUM_0133___c 731 GTCTCGACCTCCCAGAAACGATTAAATTCCAGCAGAC-TGTAGAAGAAGA 779
BSNT_00251___ 741 ACTGGGTGTGAGATTTAATGAGCCTATGCTCACAATCGAAGATGCCGCTG 790
|||||||.|.|..||| || ||.||||||.
BPUM_0133___c 780 ACTGGGTATTACGTTT------CC----------------GAGGCCGCTT 807
BSNT_00251___ 791 CTGA------------------AATCCGT----GCTCTTTTTCAGGGGGA 818
|||| ||.||.| |||||||.|||||.|||
BPUM_0133___c 808 CTGACCATGGATGAAATGGCAGAAGCCTTAACAGCTCTTTATCAGGAGGA 857
BSNT_00251___ 819 GAAGACTTTATGA 831
.|.|||.|.||||
BPUM_0133___c 858 CACGACATCATGA 870
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