Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00256 and BPUM_0137

See Amino acid alignment / Visit BSNT_00256 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:12
# Commandline: needle
#    -asequence dna-align/BSNT_00256___rpsI.1.24716.seq
#    -bsequence dna-align/BPUM_0137___rpsI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00256___rpsI-BPUM_0137___rpsI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00256___rpsI-BPUM_0137___rpsI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00256___rpsI
# 2: BPUM_0137___rpsI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 394
# Identity:     336/394 (85.3%)
# Similarity:   336/394 (85.3%)
# Gaps:           2/394 ( 0.5%)
# Score: 1436.0
# 
#
#=======================================

BSNT_00256___      1 TTGGCACAGGTTCAATATTACGGTACTGGCCGTCGTAAAAGCTCTGTAGC     50
                     ||||||||||||||||||||||||||.||.|||||||||||.||||||||
BPUM_0137___r      1 TTGGCACAGGTTCAATATTACGGTACAGGTCGTCGTAAAAGTTCTGTAGC     50

BSNT_00256___     51 GCGTGTGCGTTTAGTTCCAGGAGAAGGCCGTATCGTCGTTAATAATCGTG    100
                     |||.||.||.|||||||||||.||||||||||||||||||||||||||||
BPUM_0137___r     51 GCGCGTTCGCTTAGTTCCAGGTGAAGGCCGTATCGTCGTTAATAATCGTG    100

BSNT_00256___    101 AAATCAGCGAACACATCCCATCTGCAGCTTTAATCGAAGATATCAAACAA    150
                     ||||.|..|||.||||.||||..||.||||||||||||||..|.||||||
BPUM_0137___r    101 AAATTACTGAATACATTCCATTCGCTGCTTTAATCGAAGACGTGAAACAA    150

BSNT_00256___    151 CCATT-AACTTTGACTGAAACAGCTGGCACTTATGATGTTTTAGTAAACG    199
                     ||.|| ||| .|.||.|||||||||..||..||.||||||.|.||||..|
BPUM_0137___r    151 CCTTTGAAC-ATCACAGAAACAGCTAACAGCTACGATGTTCTTGTAACTG    199

BSNT_00256___    200 TACATGGAGGCGGCTTATCTGGTCAAGCTGGAGCAATCCGTCACGGTATC    249
                     |.||.||.||.||.||.||||||||||||||||||||.||||||||||||
BPUM_0137___r    200 TTCACGGTGGTGGATTCTCTGGTCAAGCTGGAGCAATTCGTCACGGTATC    249

BSNT_00256___    250 GCTCGTGCTTTGCTTGAAGCAGATCCAGAATACCGTACAACTCTTAAACG    299
                     .||||||||.|.||.||||.||||||.||.|||||||||.|.||||||||
BPUM_0137___r    250 TCTCGTGCTCTTCTAGAAGTAGATCCTGAGTACCGTACATCACTTAAACG    299

BSNT_00256___    300 TGCAGGTCTTCTGACTCGTGACGCTCGTATGAAAGAACGTAAAAAATACG    349
                     |||.||.|||||.|||||||||.|.|||||||||||.|||||.|||||||
BPUM_0137___r    300 TGCTGGACTTCTTACTCGTGACCCACGTATGAAAGAGCGTAAGAAATACG    349

BSNT_00256___    350 GTCTTAAAGGCGCTCGTCGTGCACCTCAGTTCTCAAAACGTTAA    393
                     |||||||||||||.|||||.||||||||||||||||||||||||
BPUM_0137___r    350 GTCTTAAAGGCGCACGTCGCGCACCTCAGTTCTCAAAACGTTAA    393


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