Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00260 and BPUM_0143

See Amino acid alignment / Visit BSNT_00260 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:13
# Commandline: needle
#    -asequence dna-align/BSNT_00260___ybaK.1.24716.seq
#    -bsequence dna-align/BPUM_0143___ybaK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00260___ybaK-BPUM_0143___ybaK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00260___ybaK-BPUM_0143___ybaK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00260___ybaK
# 2: BPUM_0143___ybaK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 538
# Identity:     273/538 (50.7%)
# Similarity:   273/538 (50.7%)
# Gaps:         188/538 (34.9%)
# Score: 611.5
# 
#
#=======================================

BSNT_00260___      1 ATGGCAGAAGTACTGTC-TTTTATGGATGTGAAACGCCAAAAGGATTTTG     49
                     ||||||||.||.||.|| ||||||..|| |||||  .|||||.||     
BPUM_0143___y      1 ATGGCAGAGGTTCTTTCATTTTATCAAT-TGAAA--ACAAAACGA-----     42

BSNT_00260___     50 AAT-------TAGAAAAGAA---CTTGCTCAAAGAAC--TCTCTCT----     83
                     .||       |.||||||||   .||||     |.||  |.|||||    
BPUM_0143___y     43 GATGTCACGCTTGAAAAGAAGCTGTTGC-----GTACATTGTCTCTTCAA     87

BSNT_00260___     84 ---GAGACAAATTATCCAGTCTG-----TTAAGGATTGTTTAGAACCATT    125
                        |.|||..||..|    ||||     ||.|.||      ||||.|  |
BPUM_0143___y     88 CAGGTGACGGATGCT----TCTGAGAAATTCACGA------AGAAGC--T    125

BSNT_00260___    126 ATTTCCATTTTTACATGATGAACGAGAT---ATTATTACCGAAGGCTGTA    172
                     .||.||  ||||.|| |||||.|.||.|   |||||.|..||.|||||||
BPUM_0143___y    126 GTTCCC--TTTTGCA-GATGATCCAGCTGGGATTATGAGTGATGGCTGTA    172

BSNT_00260___    173 TTGATTTTGCTATAGAAGCCTATTTGTTAGGCGGGCGTTTTGGGATATTC    222
                     |||||||.||.||.||.||||.|||...|||         |||||.||.|
BPUM_0143___y    173 TTGATTTCGCCATTGAGGCCTTTTTAGCAGG---------TGGGAGATAC    213

BSNT_00260___    223 GGCT----------ATTACGGAGAATCCATGC--------AGAGTA----    250
                     || |          |.|||||.|||| |||.|        |.||.|    
BPUM_0143___y    214 GG-TGAGTCGAGTAAGTACGGTGAAT-CATTCGATGATATAAAGAAGCGG    261

BSNT_00260___    251 TCAGTGCCCGCTCTGCAAGA-GAAGAAGAAGAGCT--------ACGTATG    291
                     |||||.|            | ||||||.|.|||||        |..||..
BPUM_0143___y    262 TCAGTTC------------ATGAAGAAAATGAGCTGGTTGAGGAGCTAGC    299

BSNT_00260___    292 GAGTTTTTTGATTATCTCTATAATTGGATACACGAGCAATACGCAACATT    341
                     |.|.|.||||       |.||..|.||        |.||||.|      |
BPUM_0143___y    300 GGGGTGTTTG-------CAATCGTGGG--------GGAATATG------T    328

BSNT_00260___    342 T--GATAAAAACACGGTTTATGAAGCGGCACGCAAG--------------    375
                     |  ||              |||.|||||     |||              
BPUM_0143___y    329 TCCGA--------------ATGGAGCGG-----AAGATGTCGTGTCTATA    359

BSNT_00260___    376 TTCATT----AAAGAT------------TGGTGGACAGCAGGGTTTGTTC    409
                     |.||||    ||.|||            |||||| |||.|.||.|  |||
BPUM_0143___y    360 TCCATTTGCGAAGGATTTTTTAAGCATGTGGTGG-CAGGAAGGCT--TTC    406

BSNT_00260___    410 ---AAAGAGAAAAACAGTGTAAGCTTCGCATGCGGTAA    444
                        ||..|||||||..|..|||||||||..|||..|||
BPUM_0143___y    407 GAGAATCAGAAAAAAGGCATAAGCTTCGGCTGCACTAA    444


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