Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00265 and BPUM_0147
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:13
# Commandline: needle
# -asequence dna-align/BSNT_00265.1.24716.seq
# -bsequence dna-align/BPUM_0147___kbaA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00265-BPUM_0147___kbaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00265-BPUM_0147___kbaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00265
# 2: BPUM_0147___kbaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 717
# Identity: 438/717 (61.1%)
# Similarity: 438/717 (61.1%)
# Gaps: 162/717 (22.6%)
# Score: 1449.0
#
#
#=======================================
BSNT_00265 1 ATGATTCATCTGTTTGGAATTATACATAACAAAATATCGCTGTTCGCGAT 50
BPUM_0147___k 0 -------------------------------------------------- 0
BSNT_00265 51 TTTTGAGGGGATGAATAAAGAAATGAAAAGCCGTGGTTTAGTTCGTTTTT 100
||||||||.||.|.||||||||||||||
BPUM_0147___k 1 ----------------------ATGAAAAGTCGGGATTTAGTTCGTTTTT 28
BSNT_00265 101 TCTTTTCTATTTTAGCTGTCGGAGCGCTTATCACGAGTATTGTGGGTTTT 150
||||.|||.|..|||||||.||||||.|.||.||.||..|.||.||.|||
BPUM_0147___k 29 TCTTCTCTGTGCTAGCTGTTGGAGCGGTCATTACAAGCGTGGTAGGCTTT 78
BSNT_00265 151 GCTTTAAAATGGGGAGAATAT-AGAGGGCTGTTTCTTACATTTGAAGCGG 199
||..|..|.|||||..||||| ||| .|||.|||.|..||||||||
BPUM_0147___k 79 GCGCTGGAGTGGGGGAAATATCAGA-AGCTTTTTATATCATTTGAA---- 123
BSNT_00265 200 GGCAGATT----TTC---TCTGTTTTATTTTGGTTTATCGGTGTAGGCAT 242
|.|.| .|| |||||.||.||||||||.||.|||||.||.||
BPUM_0147___k 124 ---ATACTAGAAATCGCATCTGTGTTGTTTTGGTTCATTGGTGTGGGGAT 170
BSNT_00265 243 GATTTTCAGTGTGATCAGCCAAATGGGTTTTTTCGTGTTTTTAACAGTTC 292
||||||.|||||.||.|||||.|||||.|||.|.||.||||||||.||.|
BPUM_0147___k 171 GATTTTTAGTGTCATTAGCCAGATGGGGTTTGTTGTCTTTTTAACGGTGC 220
BSNT_00265 293 ATCGGTTTGCGCTTGAGATATTAAGGTCCTCCTCTTTGTGGAAT----TT 338
|.||.|||||.||.||||||||..|.||....||.||.|||||| ||
BPUM_0147___k 221 ACCGATTTGCCCTAGAGATATTCCGATCACATTCATTATGGAATACCATT 270
BSNT_00265 339 GCTGCAGTTGTTTTTCATCCTGTTTGTTGCT-TTTGATTTAATGTACGTG 387
|||.|||||.|..|..|.|||| |||| |||||||||...|||.||
BPUM_0147___k 271 ----CAGCTGTTTCTGGTGATCTTTG-TGCTGTTTGATTTAGCTTACTTG 315
BSNT_00265 388 CGTTTTTTATTTTTTGGAGAGAGCGGAGAATC------------------ 419
||.|||||.|||||.||.||||.| |||||
BPUM_0147___k 316 CGATTTTTGTTTTTCGGGGAGAAC---GAATCATTTCTTCCATACCTATG 362
BSNT_00265 420 GCTGGCTGGCTATGCGTGGTTACCGATGTTTT--TATTGATCTTTGGAGT 467
||||.|||.|| |||.||.|||.|| .||||||| ||
BPUM_0147___k 363 GCTGCCTGTCT--------TTATCGGTGTGTTCGCATTGATC------GT 398
BSNT_00265 468 GATTACAGCTTA-TATAAAGCAAAAGCAGTCCTCTAAGAAAACATTTGTG 516
| .|||| |.|||| ||..|||||||||||||||||||||||||.
BPUM_0147___k 399 G------TCTTACTTTAAA-CAGCAGCAGTCCTCTAAGAAAACATTTGTT 441
BSNT_00265 517 TCATCGTTGTTTTTGATGGTTGTGATTACCGCATTAGAATGGTTCCCTGC 566
||..|..|||||.|.||||||||.||.|||||..|||||||||||||.||
BPUM_0147___k 442 TCCGCAATGTTTCTCATGGTTGTCATCACCGCGCTAGAATGGTTCCCGGC 491
BSNT_00265 567 ATTAAGAGTAAATGATGAGGACTGGCTTTATTTAATGCTTTTTCCGTTAA 616
..|.|||||.|||||.|||||||||||.|||.|||||||.||.|||.||.
BPUM_0147___k 492 GCTCAGAGTCAATGAAGAGGACTGGCTGTATCTAATGCTATTCCCGCTAT 541
BSNT_00265 617 T-GGCATGTAATGCCTTCCAATT----GCTGATGCTGCCGAAGTTTGCA- 660
| ||| ||||||||.||.||.|| ||| .|||||..||||.||
BPUM_0147___k 542 TAGGC-TGTAATGCGTTTCAGTTATTAGCT----ATGCCGCGGTTTTCAA 586
BSNT_00265 661 --GC-AAAG-----TAA 669
|| |||| |||
BPUM_0147___k 587 AGGCGAAAGCTACTTAA 603
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