Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00315 and BPUM_0153

See Amino acid alignment / Visit BSNT_00315 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:14
# Commandline: needle
#    -asequence dna-align/BSNT_00315___ybbC.1.24716.seq
#    -bsequence dna-align/BPUM_0153___ybbC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00315___ybbC-BPUM_0153___ybbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00315___ybbC-BPUM_0153___ybbC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00315___ybbC
# 2: BPUM_0153___ybbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1308
# Identity:     896/1308 (68.5%)
# Similarity:   896/1308 (68.5%)
# Gaps:         123/1308 ( 9.4%)
# Score: 2873.0
# 
#
#=======================================

BSNT_00315___      1 ATGAGAAAAACA---------ATATTCGC-----TTTTCTGACAGGGCTC     36
                     .|||.|||||||         |||.||||     ||           |||
BPUM_0153___y      1 TTGAAAAAAACAGCAAGCTTGATACTCGCAAGCATT-----------CTC     39

BSNT_00315___     37 ATGATGTTCGGAACGATAACCGCTGCCTCTGCTTCACCCG-ATTCAAAGA     85
                     ||||||   .|.||..|.|||||.|||      ||.|||| |..|.||||
BPUM_0153___y     40 ATGATG---AGCACATTGACCGCCGCC------TCCCCCGCAAACCAAGA     80

BSNT_00315___     86 ATCAAAC----------GGCTAAAAAGCCTAAAGTCCAGACCGGTATAGA    125
                     | |.|||          ||..|||||| |.|.||||.|.||.||.||.||
BPUM_0153___y     81 A-CGAACAGATACTAAAGGAAAAAAAG-CGACAGTCAAAACAGGGATTGA    128

BSNT_00315___    126 CACGCTCTTGCCAGACTATAAAAAACAGCTC--------AAGGGAAAACG    167
                     .||.||..|..|||.|       |||...||        |||||||||.|
BPUM_0153___y    129 AACACTACTCTCAGGC-------AACCTTTCATGGTTAAAAGGGAAAAAG    171

BSNT_00315___    168 CATCGGACTGATCACCAATCCAACCGGAGTAAACGCATCTCTGAAAAGCA    217
                      .|.||.||.||.||.||||||||.||..|..|.|||..|.|||||||||
BPUM_0153___y    172 -GTAGGCCTCATTACGAATCCAACTGGTATTGATGCAAATATGAAAAGCA    220

BSNT_00315___    218 GTGTCGATATTCTTTACGAGAACCCAGATATCAAACTGACAG--CTTTAT    265
                     ||||||||.||||.|..|||.|.|||.|||||||.||.||.|  ||||||
BPUM_0153___y    221 GTGTCGATCTTCTATTTGAGCATCCAAATATCAAGCTTACTGCTCTTTAT    270

BSNT_00315___    266 TCGGCCCTGAACACGGCGTCCGCGGTGACGCCCAGGCTGGAGACGAAGTA    315
                       ||.||||||||.||.||.|||||.||.||.||.||.|||||.|..||.
BPUM_0153___y    271 --GGGCCTGAACATGGTGTGCGCGGCGATGCACAAGCAGGAGAAGGCGTC    318

BSNT_00315___    316 GGCTCTTACATTGACGAAAAAACCGGGGTACCCGTATACAGCCTCTACGG    365
                     |..||.||.|..||.||||||||.||..|.||.||.|||...|||||.||
BPUM_0153___y    319 GAATCCTATACCGATGAAAAAACAGGTCTTCCTGTTTACTCTCTCTATGG    368

BSNT_00315___    366 AAAAACGAAAAAACCGACTCCAGAAATGCTGAAAAATGTCGATATTCTT-    414
                     ||||||.|.||||||.||.||.||.|||||.||||||||.|| ..|||| 
BPUM_0153___y    369 AAAAACAAGAAAACCAACGCCTGACATGCTCAAAAATGTAGA-CGTCTTG    417

BSNT_00315___    415 ATGTTTGACATTCAGGATGTCGGGACCCGTTTCTACACGTACATTTATAC    464
                     .|||||||.|||||.|||||.||..|.||||..|||||.||.|||||.||
BPUM_0153___y    418 CTGTTTGATATTCAAGATGTTGGTTCTCGTTATTACACCTATATTTACAC    467

BSNT_00315___    465 AATGGCATACGCAATGGAAGCCGCTAAAGAAAACGGCATTCCATTTATGG    514
                     .|||||.||.||||||||.|||||.|||||||||..||||||.|||.|.|
BPUM_0153___y    468 GATGGCCTATGCAATGGAGGCCGCGAAAGAAAACAACATTCCCTTTGTTG    517

BSNT_00315___    515 TGTTGGACCGTCCGAATCCTCAAGGAGGGAATCATA-TTGAAGGACCAAT    563
                     |..|.||||||||.||||| ||..|..|||.|.|.| |.|||||.||..|
BPUM_0153___y    518 TCCTAGACCGTCCAAATCC-CATTGGCGGATTAAAAGTAGAAGGCCCTGT    566

BSNT_00315___    564 CTTAGAACCTGACTACGCCTCATTTGTCGGATTGTATCCCATTCCATTGA    613
                     ||||||||||||..||||.||||||||.||..|.|||||.||.||||| |
BPUM_0153___y    567 CTTAGAACCTGAGCACGCTTCATTTGTAGGGCTCTATCCAATACCATT-A    615

BSNT_00315___    614 AG-CATGGGATGACGATAGGCGAATTGGCTTTACTGTTCAACAAAGAATT    662
                     || |||||.|||||.|..||.|||.|.||...|.|.||.|||||||||||
BPUM_0153___y    616 AGACATGGAATGACCACTGGTGAACTAGCCACATTCTTTAACAAAGAATT    665

BSNT_00315___    663 TAGTATTAATGCCGATCTTACAGTGGTAAAAATGAAACACTGGAAGCGAA    712
                     |.||||||||||.|||.|.|||||..|.|||||||||||.||||||||..
BPUM_0153___y    666 TCGTATTAATGCTGATGTCACAGTCATCAAAATGAAACATTGGAAGCGGT    715

BSNT_00315___    713 AAATGGATTTTGACGATACCCGA--TTGCCTTTCGTCCTCCCTTCGCCTA    760
                     ..|||...|||||.|  ||.|||  .||||.||||||||.|||||.||||
BPUM_0153___y    716 CCATGACGTTTGATG--ACACGAAGCTGCCGTTCGTCCTTCCTTCACCTA    763

BSNT_00315___    761 ACATGCCGACGGTGGAAAGCACATTTGTTTATCCTGCAACCGGGCTGATT    810
                     |.||||||||.|||||.||.||.|||||.|||||.||.||.||..|.|||
BPUM_0153___y    764 ATATGCCGACAGTGGATAGTACCTTTGTATATCCCGCCACAGGATTAATT    813

BSNT_00315___    811 GAAGGAACAAATATATCCGAAGGGCGAGGGACAACAAAGCCATTCGAATT    860
                     |||||.||||||.|.||.|||||..||||.||||||||.||||||||..|
BPUM_0153___y    814 GAAGGGACAAATGTCTCTGAAGGCAGAGGAACAACAAAACCATTCGAGCT    863

BSNT_00315___    861 GATCGGAGCTCCCTTTATCAAAAGCACAGAACTTGAAGAAACA-TTAAAC    909
                     .||.||.|||||.|.||||||.||||..||.||.|.|| |.|| ||||| 
BPUM_0153___y    864 CATTGGCGCTCCATATATCAATAGCAATGAGCTAGCAG-ATCATTTAAA-    911

BSNT_00315___    910 AGCCTCCATT-----TGCCGGGCGTTACATTTAGGGCAGCATCCTTCACA    954
                         ||.|||     |...|||.||.|.||||||..|.|.|||.|||||.
BPUM_0153___y    912 ----TCAATTAAAACTAAAGGGTGTGAAATTTAGACCCGTATCATTCACC    957

BSNT_00315___    955 CCGACGTTTTCTAAACAT-CAAGGAACGCTTTGCCACGGTGTGCAGCTCT   1003
                     ||.||.|||||||||||| ||.|||| |||.|..||||||||||||||.|
BPUM_0153___y    958 CCCACTTTTTCTAAACATGCAGGGAA-GCTATCACACGGTGTGCAGCTAT   1006

BSNT_00315___   1004 ATGTGACAGAAAGAGATAAGTTTGAAGCCGTTAAAACGGGTCTTTCAGTC   1053
                     |.||.|||||..|...|...||.|||||.||.|||||.|||.|.||..||
BPUM_0153___y   1007 ACGTCACAGACCGCTCTTCATTCGAAGCGGTAAAAACAGGTTTATCCATC   1056

BSNT_00315___   1054 ATTAAAACCATACACGATCTCTATCCTGAGGATTTTGAGTTCCTGTC-AA   1102
                     ||.|||.|||||||.|||.|.|||||..|.||.|||||.||||| || ||
BPUM_0153___y   1057 ATCAAAGCCATACATGATTTATATCCAAAAGAATTTGAATTCCT-TCAAA   1105

BSNT_00315___   1103 CAGGTTCATTCGATAAACTGGCA--GGCAACGGCTGGATCAGGACAAAAA   1150
                     ||||....||.||||||||  ||  ||.||.||.|||||||    ||.||
BPUM_0153___y   1106 CAGGAAGCTTTGATAAACT--CATCGGGAATGGTTGGATCA----AAGAA   1149

BSNT_00315___   1151 TTGAAA------ATGGAACTTCGATTGAGAACATCAT-AAACAGCTATGA   1193
                       ||||      |.||||||||..|..|..||||||| |||| |||||  
BPUM_0153___y   1150 --GAAATCAATCAAGGAACTTCCGTCAAACACATCATGAAAC-GCTAT--   1194

BSNT_00315___   1194 AAAAACA----CTCCAACAATTCAGCAAAACAA--GAAAAAAATATCTCA   1237
                       .|.||    |||.||...|||  .||||.||  |.||.||||||||||
BPUM_0153___y   1195 --CATCACGACCTCAAATCGTTC--GAAAAGAAACGGAAGAAATATCTCA   1240

BSNT_00315___   1238 TTTATTAG   1245
                     |.|||||.
BPUM_0153___y   1241 TCTATTAA   1248


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