Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00317 and BPUM_0154
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:14
# Commandline: needle
# -asequence dna-align/BSNT_00317___ybbD.1.24716.seq
# -bsequence dna-align/BPUM_0154___ybbD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00317___ybbD-BPUM_0154___ybbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00317___ybbD-BPUM_0154___ybbD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00317___ybbD
# 2: BPUM_0154___ybbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2082
# Identity: 1313/2082 (63.1%)
# Similarity: 1313/2082 (63.1%)
# Gaps: 315/2082 (15.1%)
# Score: 3719.0
#
#
#=======================================
BSNT_00317___ 1 ATG-----AGACCTGTCTTTCCGCT--TATCCTTTCAGCCGTTCTC-TTT 42
||| ||..|||| |..||||| |.|..|||.|||..|.||| ..|
BPUM_0154___y 1 ATGTTAAAAGCACTGT-TCCCCGCTGCTTTGGTTTTAGCACTGCTCACCT 49
BSNT_00317___ 43 CTTTCATGCTTTTTCGGGGCCAGACAGACAGAAG----CCTCTG-----C 83
||| ||.|| ||| ||.| ||||| .||||| |
BPUM_0154___y 50 CTT-----CTATT------CCA-ACGG--AGAAGGTAAGCTCTGCCCCTC 85
BSNT_00317___ 84 ATCCAAACGTGCAATCGATGCCAATCAGATTGT--CAATCGTATGTCGTT 131
.|||||.| ||.||.||.||.|| .||.| |||||.||
BPUM_0154___y 86 TTCCAACC-----------GCAAAACAAATGGTACAAAAC--ATGTCTTT 122
BSNT_00317___ 132 AGATGAAAAACTCGGCCAGATGCTGATGCCTGATTTTAGAAATTGGCAAA 181
.||||||||..|.|||||.|||||.|||||.||.|||.|.||||||||||
BPUM_0154___y 123 GGATGAAAAGATAGGCCAAATGCTCATGCCAGACTTTCGTAATTGGCAAA 172
BSNT_00317___ 182 AGGAAGGCGAGTCCTCTCCGCAAGCCCTTACAGAAATGAATGATGAAGTC 231
...|||..||.|||.|.||...||.|.|.||..|.||||||.|.|||||
BPUM_0154___y 173 CAAAAGATGAATCCACACCTACAGGCTTCACTAAGATGAATAAAGAAGT- 221
BSNT_00317___ 232 GCCA-GCCTCGTCAAGAAATATCAATTCGGAGGCATCATCCTTTTTGCAG 280
|.|| .|||.||..|.||||||||..|.||.||..|||||.|.|||||.|
BPUM_0154___y 222 GTCACACCTTGTAGAAAAATATCATCTAGGCGGTGTCATCTTATTTGCTG 271
BSNT_00317___ 281 AAAATGT-----AAAAACAACAAAACAAACTGTCCAACTGACAGACGATT 325
|.||||| | .||.||||||||.|||.||||.||..|.||.|
BPUM_0154___y 272 AGAATGTTGTTGA-----TACGAAACAAACCGTCAAACTCACCCATGAAT 316
BSNT_00317___ 326 ACCAAAAGGCAAGTCCAAAAATCCC---GCTCATGCTGAGT---ATTGAT 369
..|||||.|||...|||||.||.|| .||||| | ||||||
BPUM_0154___y 317 TTCAAAAAGCATCACCAAAGATTCCATTACTCAT------TTCAATTGAT 360
BSNT_00317___ 370 CAGGAAGGCGGCATTGTAACGCGGTTAGGGGAGGGCACTAATTTCCCAGG 419
||.|||||.||.||.||.||..|.|||....||||.||..||||||||||
BPUM_0154___y 361 CAAGAAGGTGGAATCGTCACAAGATTACAAAAGGGAACACATTTCCCAGG 410
BSNT_00317___ 420 GAATATGGCACTGGGCGCAGCCAGAAGC-AGAATCAATGCGTATCAGACC 468
.||||||.|..|.||.||..|.|||||| |||| .|||||.||..|.||.
BPUM_0154___y 411 AAATATGTCGATTGGTGCCTCTAGAAGCAAGAA-AAATGCATACGACACA 459
BSNT_00317___ 469 GGCAGCATCATCGGGAAAG-----AGCTCTCTGCCTTAGGCATCAATACA 513
||.|..|||||.||.|||| |.|.|.| ||||.|||||||||
BPUM_0154___y 460 GGGAAAATCATTGGTAAAGAATTAAACACAC-----TAGGGATCAATACA 504
BSNT_00317___ 514 GATTTCAGCCCTGTCGTGGACATTAACAATAATCCTAATAATCCTGTAAT 563
.|.|||...|||||..|.||..|.||.|||||.||.||.||.||.||.||
BPUM_0154___y 505 AACTTCTCTCCTGTGCTAGATGTGAATAATAACCCAAACAACCCCGTCAT 554
BSNT_00317___ 564 CGGCGTACGGTCATTCAGCTCCAATCGAGAAC-TGACATCACGCCTCGGT 612
.||.||.||.||.||.|||||..|||..|..| ||.|| ||.|.||.|||
BPUM_0154___y 555 TGGTGTCCGTTCCTTTAGCTCTGATCCTGCTCTTGTCA-CAAGGCTTGGT 603
BSNT_00317___ 613 TTATACACGATGAAAGGGTTGCAGCGGCAG-----GATATCGCGTCTGCC 657
.|..|.||.|||||.||..|.||...|.|| |||.||| .|.
BPUM_0154___y 604 CTTCAAACCATGAAGGGACTTCAAAAGGAGAAGACGATTTCG-----ACA 648
BSNT_00317___ 658 CTCAAACATTTCCCGGGACATGGAGACACGGACGTTGACAGCCATTATGG 707
|||||.|||||||||||||||||.||.||.|..||.||.||.||.|||||
BPUM_0154___y 649 CTCAAGCATTTCCCGGGACATGGTGATACAGCAGTCGATAGTCACTATGG 698
BSNT_00317___ 708 ACTGCCGCTCGTTTCCCATGGCCAAGAACGGCTTCGTGAGGTCGAGCTTT 757
..||||||||||....||||..|.|||.||.||.....|.||.|||||.|
BPUM_0154___y 699 CTTGCCGCTCGTAGAACATGATCTAGATCGTCTAAAAAAAGTGGAGCTGT 748
BSNT_00317___ 758 ATCCTTTTCAAAAAGCAATTGATGCTGGTGCTGATATGGTGATGACAGCC 807
||||.||||||.||||.||..|.||||||||.||||||||.|||||.||.
BPUM_0154___y 749 ATCCGTTTCAACAAGCGATCAACGCTGGTGCGGATATGGTCATGACCGCT 798
BSNT_00317___ 808 CATGTTCAGTTTCCCGCCTTTGATGACACCACTTACAAAAGCAAACTCGA 857
||||||||.|||||.||..|||||||.||.||.||.|||||||||...||
BPUM_0154___y 799 CATGTTCAATTTCCTGCTATTGATGATACAACGTATAAAAGCAAAAAAGA 848
BSNT_00317___ 858 TGGATCGGACATTTTGGTTCCAGCTACACTT-TCAAAAAAAGTGATGACA 906
|||...|||.|||.||||||||||.|| ||| ||.||||||||.||.|||
BPUM_0154___y 849 TGGCGAGGAAATTATGGTTCCAGCAAC-CTTATCGAAAAAAGTCATCACA 897
BSNT_00317___ 907 GGTCTTCTT---CGTCAGGAAATGGGCTTTAATGGTGTGATCGTTACCGA 953
..| ||.|| .| |.||.|||||||||.|.||.||..||||.||.||
BPUM_0154___y 898 AAT-TTATTAAAAG--AAGAGATGGGCTTTCAAGGAGTTGTCGTAACAGA 944
BSNT_00317___ 954 TGCACTCAATATGAAGGCAATCGCAGATCATTTCGGACAGGAAGAGGCTG 1003
.||.||.||.|||||.||.||.||||||.|.|||||||||||.||.||||
BPUM_0154___y 945 CGCCCTAAACATGAAAGCGATTGCAGATAACTTCGGACAGGAGGAAGCTG 994
BSNT_00317___ 1004 TGGTCATGGCC-GTAAGAGCTGGTGTCGATATTGCATTAATGCCAGCCTC 1052
|.||.|||||| .|||| |||||.|||||.||.||..|.||||||||..|
BPUM_0154___y 995 TAGTGATGGCCATTAAG-GCTGGCGTCGACATCGCCCTCATGCCAGCACC 1043
BSNT_00317___ 1053 AGTCACTTCATTGAAAGAAGAACAG---AAATTC----GCACGTGTTATT 1095
||||||.||..|.|| ||||| |||.|| |.|.||| ||
BPUM_0154___y 1044 AGTCACCTCTCTTAA-----AACAGAGAAAAATCTTGAGAATGTG---TT 1085
BSNT_00317___ 1096 CAA-GCTTTGAAAGAAGC---CGTGAAAAACGGGGATATTC------CTG 1135
||| ||..|.|||.|.|| .||.||||| .||.||.| ||
BPUM_0154___y 1086 CAATGCGGTAAAACAGGCAATTGTAAAAAA---AGAAATCCCGATGTCT- 1131
BSNT_00317___ 1136 AACAACAAATCAACAATTCAGTTGAAAGAA----TCATTTCCCTGAAAAT 1181
|||||||||.|.||.|||||||.|| |||.| ||||.||
BPUM_0154___y 1132 -----CAAATCAACGAATCTGTTGAAAAAATTCTTCAAT----TGAAGAT 1172
BSNT_00317___ 1182 AAAACGCGGCATGTATC----CAGCGCGAAACAGC----GAC-----AGT 1218
.|||||.||||| .||| || |||.|.| ||| ||.
BPUM_0154___y 1173 CAAACGTGGCAT-CATCTCTTCA-----AAAAAACCTATGACCCTTGAGA 1216
BSNT_00317___ 1219 ACAAAAGAAAAAATAGCCA---AAGCC-----AAAAAAATCGTAGGAAGC 1260
|.||||..||||| ||||| |||.| .||||||||
BPUM_0154___y 1217 AAAAAATCAAAAA-AGCCACTCAAGTCGTTGGGAAAAAATC--------- 1256
BSNT_00317___ 1261 AAGCAGCACCTGAAAGCAGAGAAAAAAATAGC---TGAAAAAGCAGTAA- 1306
|||||.|||||||||..|||||||.|| || |||...|.|
BPUM_0154___y 1257 -----GCACCGGAAAGCAGAACAAAAAATGGCACGTG---AAGGGATCAC 1298
BSNT_00317___ 1307 -CTGTATTAAAAAATGAAC-AGCACACTTTGCCATTCAAGCCTAAAAAAG 1354
||| .||||||| .||| |..|.||..|.||.|||||.||||||||
BPUM_0154___y 1299 CCTG-CTTAAAAA--CAACAATAAGACCCTACCCTTCAAACCTAAAAA-- 1343
BSNT_00317___ 1355 GCAGCCGA--------ATCTTAATTGTGGCACCTTACGAAGAACAAACTG 1396
|| |||||..||.||||||||||||||||.||.||
BPUM_0154___y 1344 ------GAATGACAAGATCTTGGTTATGGCACCTTACGAAGATCAGAC-- 1385
BSNT_00317___ 1397 CTTCAATCGAACAAACCAT-----TCACGA-------TCTCATCAAGC-G 1433
|.||.|||| ||||.| |||.||.||.| |
BPUM_0154___y 1386 ----------AAAAGCCATGTCTGTCACAATTGACTCTCTGATTAAACAG 1425
BSNT_00317___ 1434 AAAGAAAATCAAACC----CGTATCTGTCGACAAAATGAATTTTGC---- 1475
||| ||.|||||.|| |||||| |.|..|.||| .||||||
BPUM_0154___y 1426 AAA-AAGATCAAGCCTGTACGTATC---CAATCATATG-CTTTTGCGGAT 1470
BSNT_00317___ 1476 --------CAACCAAGTATTTAAGGCCGAGCATGCAAAACAAGTAAAAAA 1517
||||.||| .|.|| ||.||||...||.||.|
BPUM_0154___y 1471 AAGTCCTTCAACAAAG-----------AAACA-GCCAAACTCATACAAGA 1508
BSNT_00317___ 1518 GGCTGATTATATCATAACCGGCTCCTATGTCGTCAAAAATGATCCTGTCG 1567
.|||||.|||.|.||.||.||.||.||.||.|||.|||||||.||.|..|
BPUM_0154___y 1509 CGCTGACTATGTGATTACAGGATCTTACGTTGTCCAAAATGACCCAGCTG 1558
BSNT_00317___ 1568 TCAACGACGGTGTCATCGACGACACAATAT-CA-GATTCAAGCAAATGGG 1615
|.||.||.||||||||.||.| |.|||.| || ||..|.|..|||||||
BPUM_0154___y 1559 TGAATGATGGTGTCATTGATG--ATAATGTACAGGACCCGAAAAAATGGG 1606
BSNT_00317___ 1616 CCACCGTG-TTTCCGA-GAGCTGTCATGAAAGCCGCACTGCAGCAC--AA 1661
|.|| || |||||.| |.|||||||||||||..| ||||.|||| ||
BPUM_0154___y 1607 CGAC--TGCTTTCCCACGTGCTGTCATGAAAGAAG--CTGCCGCACAAAA 1652
BSNT_00317___ 1662 CAAACCATTTGTCTTAATGAGCCTGCGCAACCCCTATGACGCAGCCAATT 1711
||||..|.|.|||.|.||||||||..|.|||||.||.||.||.||.||||
BPUM_0154___y 1653 CAAAAAAATGGTCGTCATGAGCCTAAGAAACCCTTACGATGCGGCAAATT 1702
BSNT_00317___ 1712 TCGAAGAAACAAAGGCACTGA-TTGCAGTCTATGGCTTTAAAGGATACGC 1760
|.||.||..|..|.|| ||.| |.||.||.||.||.||||||||.||..|
BPUM_0154___y 1703 TTGAGGAGGCGGATGC-CTTACTAGCTGTTTACGGTTTTAAAGGCTATTC 1751
BSNT_00317___ 1761 AAATGGCCGTTATCTTCAA----CCTAATATTCCGGCCGGAGT-GATGGC 1805
|||.||.| ..||||| ||.|||||.||.||.|||.| ||.|.|
BPUM_0154___y 1752 AAACGGAC----AATTCAACCAGCCAAATATACCTGCTGGATTAGAAGTC 1797
BSNT_00317___ 1806 GATATTCGGCCAGGCAAAACCTAAAGGCACACTTCCAGTTGACATTCCGT 1855
|||||.|||...|||..|||||||||||.|||.||.||.||.||.||.|
BPUM_0154___y 1798 -ATATTTGGCACTGCATCACCTAAAGGCAAACTGCCTGTAGATATCCCAT 1846
BSNT_00317___ 1856 CAGTCA-----CGAAACCAGGGAACACCCTTTACCCATTTGGCTACGGAT 1900
|.|||| |.|||.| |.|||||.||.|||||.|||||.|||.
BPUM_0154___y 1847 CTGTCACTCATCAAAATC-----AAACCCTGTATCCATTCGGCTATGGAC 1891
BSNT_00317___ 1901 TAAATATCAAAACGGGAAGACCGCTTTAA--- 1929
|.||..|.||| ||||| ||.|.|..||
BPUM_0154___y 1892 TCAACTTGAAA--GGGAA-ACAGATCAAATAG 1920
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