Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00344 and BPUM_0162

See Amino acid alignment / Visit BSNT_00344 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:15
# Commandline: needle
#    -asequence dna-align/BSNT_00344___ybbP.1.24716.seq
#    -bsequence dna-align/BPUM_0162___ybbP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00344___ybbP-BPUM_0162___ybbP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00344___ybbP-BPUM_0162___ybbP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00344___ybbP
# 2: BPUM_0162___ybbP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 823
# Identity:     660/823 (80.2%)
# Similarity:   660/823 (80.2%)
# Gaps:           2/823 ( 0.2%)
# Score: 2638.0
# 
#
#=======================================

BSNT_00344___      1 ATGGCTTTTGAGGATATCCCTTTTTTGCAGTACCTCGGCAATGCCGTTGA     50
                     ||||||||.|.||||||.||||||||||||||||||||.|||||.|||||
BPUM_0162___y      1 ATGGCTTTAGGGGATATTCCTTTTTTGCAGTACCTCGGTAATGCTGTTGA     50

BSNT_00344___     51 TATTCTCCTTGTTTGGTATGTGATATATAAATTGATTATGGTGATACGCG    100
                     |||||||.|||||||||||||||||||||||||.||.|||||.||.||||
BPUM_0162___y     51 TATTCTCGTTGTTTGGTATGTGATATATAAATTAATGATGGTCATCCGCG    100

BSNT_00344___    101 GCACGAAAGCGGTTCAGCTGTTAAAAGGAATTGTAGTCATCGTGCTTGTT    150
                     |.||.||||||||||||||.|||||.||||||||.|||||.||.||.||.
BPUM_0162___y    101 GAACAAAAGCGGTTCAGCTTTTAAAGGGAATTGTGGTCATTGTTCTCGTC    150

BSNT_00344___    151 CGTATGGCCAGCCAATATTTGGGCCTCAGCACACTTCAATGGCTGATGGA    200
                     .|.||||..||....|||.|.||.||.|.|||||||||||||||||||||
BPUM_0162___y    151 AGGATGGGAAGTGCGTATCTCGGTCTTAACACACTTCAATGGCTGATGGA    200

BSNT_00344___    201 CCAAGCGATAACATGGGGATTTTTAGCAATTATTATTATTTTTCAGCCTG    250
                     .||||||||.||.||||||||..|.||.||.|||||||||||||||||.|
BPUM_0162___y    201 TCAAGCGATTACGTGGGGATTCCTTGCGATCATTATTATTTTTCAGCCAG    250

BSNT_00344___    251 AGCTGAGAAGAGCGCTTGAACAGCTAGGCCGCGGCCGCTTTTTTTCGAGG    300
                     ||||.||.|||||||||||.|||||.||.||||||||.||.||.||.||.
BPUM_0162___y    251 AGCTAAGGAGAGCGCTTGAGCAGCTTGGGCGCGGCCGTTTCTTCTCAAGA    300

BSNT_00344___    301 AGCGGCACCCCTGTTGAAGAAGCGCAGCAGAAAACGATTGAGGCCATTAC    350
                     |||||.||.|||||.||.|||..|||||||||||||||.|||||.|||||
BPUM_0162___y    301 AGCGGGACACCTGTAGAGGAACAGCAGCAGAAAACGATCGAGGCAATTAC    350

BSNT_00344___    351 AAAAGCGATCAATTATATGGCGAAACGCCGTATAGGCGCCCTGCTGACCA    400
                     ||||||.||.||.||||||||.|||||..|.||.|||||.||||||||.|
BPUM_0162___y    351 AAAAGCAATTAACTATATGGCAAAACGTAGAATCGGCGCGCTGCTGACAA    400

BSNT_00344___    401 TTGAGCGGGATACTGGAATGGGGGATTATATTGAGACCGGCATACCACTA    450
                     |.|||||.||||||||.|||...|||||.||.|||||.||.||.||..||
BPUM_0162___y    401 TAGAGCGTGATACTGGGATGAATGATTACATAGAGACTGGAATTCCTTTA    450

BSNT_00344___    451 AATGCCAAAGTCAGCTCTGAGCTGCTGATCAATATTTTTATTCCAAACAC    500
                     |||||.||.||.||.||.||||||||.||.||||||||.||||||||.||
BPUM_0162___y    451 AATGCAAAGGTGAGTTCAGAGCTGCTCATTAATATTTTCATTCCAAATAC    500

BSNT_00344___    501 CCCGCTTCATGATGGTGCGGTAATTATGAAAAATAATGAAATTGCCGCGG    550
                     ||||||||||||||||||.||.||||||||...|.||||.|||||.||.|
BPUM_0162___y    501 CCCGCTTCATGATGGTGCTGTCATTATGAAGCGTGATGAGATTGCAGCTG    550

BSNT_00344___    551 CCGCCTGTTATCTGCCGCTTTCTGAGAGCCCGTTTATTTCTAAAGAACTG    600
                     |.||.||||||.|.|||||.||.||.||.||.|||||.||.||.|||||.
BPUM_0162___y    551 CGGCTTGTTATTTACCGCTGTCAGAAAGTCCTTTTATCTCAAAGGAACTT    600

BSNT_00344___    601 GGCACGCGNCACAGAGCGGCAGTCGGTATCAGTGAAGTAACAGACAGTTT    650
                     ||.||||| |||||.|||||||||||.||.||.|||||.||||||||.||
BPUM_0162___y    601 GGGACGCGTCACAGGGCGGCAGTCGGAATTAGCGAAGTGACAGACAGCTT    650

BSNT_00344___    651 GACGATTATTGTGTCTGAAGAGACCGGCGGCGTCAGTGTGGCAAAGAACG    700
                     |||..|.||.||.|||||.|||||.||||||.|...|||.||||..||.|
BPUM_0162___y    651 GACCGTCATCGTTTCTGAGGAGACAGGCGGCATTTCTGTCGCAAGAAATG    700

BSNT_00344___    701 GCGACCTTCACAGAGAGCTTACAGAAGAAGCGCTGAAAGAAATGCTTGA-    749
                     |.||.||.|||.||||..|.||||||||||||||..||||||||| ||| 
BPUM_0162___y    701 GTGATCTCCACCGAGAATTGACAGAAGAAGCGCTTCAAGAAATGC-TGAT    749

BSNT_00344___    750 AGCCGAGTTTAAGAAAAACACCAGAGACACTTCTTCTAACCGCTGGTATT    799
                     .||.||.||||..||.||||.||.|||..||||.||.|.|...|||||||
BPUM_0162___y    750 TGCTGAATTTAGTAAGAACAGCAAAGATGCTTCCTCGACCAAATGGTATT    799

BSNT_00344___    800 GGAGGGGCAAGAAAAATGGATAA    822
                     |||||||||||||||||||||||
BPUM_0162___y    800 GGAGGGGCAAGAAAAATGGATAA    822


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