Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00366 and BPUM_0180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:16
# Commandline: needle
# -asequence dna-align/BSNT_00366___ybxG.1.24716.seq
# -bsequence dna-align/BPUM_0180___ybxG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00366___ybxG-BPUM_0180___ybxG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00366___ybxG-BPUM_0180___ybxG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00366___ybxG
# 2: BPUM_0180___ybxG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1416
# Identity: 1070/1416 (75.6%)
# Similarity: 1070/1416 (75.6%)
# Gaps: 54/1416 ( 3.8%)
# Score: 4003.0
#
#
#=======================================
BSNT_00366___ 1 GTGGCAAATAAAGAATTAAAGAGGGGCCTGGGCGCGCGCCATATTCAGAT 50
|||||..|.||.||||||||.||.||..|..|.||.|||||||||||.||
BPUM_0180___y 1 GTGGCTCAAAAGGAATTAAAAAGAGGGTTAAGTGCCCGCCATATTCAAAT 50
BSNT_00366___ 51 GATCGCCTTGGGCGGTACAATCGGTGTTGGCTTGTTTATGGGTTCTGCCA 100
||||||..|.|||||.||.||.|||||||||||.||||||||.||.||||
BPUM_0180___y 51 GATCGCACTCGGCGGCACGATTGGTGTTGGCTTATTTATGGGGTCAGCCA 100
BSNT_00366___ 101 GCACGATTTCATGGACTGGCCCATCTGTCCTTCTGGCTTATGCAATATGC 150
...|.|||..||||||.||.|||||.||.|||||.||.||.|||.||||.
BPUM_0180___y 101 AGGCCATTCAATGGACAGGTCCATCGGTTCTTCTCGCGTACGCAGTATGT 150
BSNT_00366___ 151 GGAATTTTTATCTTTTTTATTATGCGTGCGATGGGTGAAATGCTGTATGT 200
||.||.|||||||||||||||||||||||||||||.||||||.|.||.||
BPUM_0180___y 151 GGTATCTTTATCTTTTTTATTATGCGTGCGATGGGAGAAATGTTATACGT 200
BSNT_00366___ 201 CGAGCCGAGCACAGGTTCTTTTGCGACGTTCGGCCATCAATATATTCATC 250
.||.|||||.||||||||.|||||.||.|||||.||||||||||||||||
BPUM_0180___y 201 TGAACCGAGTACAGGTTCATTTGCTACATTCGGTCATCAATATATTCATC 250
BSNT_00366___ 251 CGATGGCAGGTTATATAACAGCATGGAGCAACTGGTTCCAGTGGATTATC 300
||.|.||.||.|||||.|||||.|||||.|||||||||||||||.|.||.
BPUM_0180___y 251 CGCTTGCGGGGTATATGACAGCTTGGAGTAACTGGTTCCAGTGGGTCATT 300
BSNT_00366___ 301 GTCGGCATGTCAGAAATTATCGCTGTCGGTTCTTATATGAAGTATTGGTT 350
|||||.|||||.||||||||.||.||.||..||||||||||.||||||||
BPUM_0180___y 301 GTCGGGATGTCGGAAATTATTGCCGTAGGCGCTTATATGAAATATTGGTT 350
BSNT_00366___ 351 CCCGGATTTGCCTGCTTGGATACCTGGTATCGTGGCAATGGTGATTCTTG 400
|||.||..||||.||.|||||.||.||..|..|.||.|||.|.|||.|.|
BPUM_0180___y 351 CCCAGAGCTGCCAGCGTGGATTCCAGGATTAATTGCGATGATTATTTTGG 400
BSNT_00366___ 401 GTGCGGCGAATTTAATTTCTGTTAAGTCGTTTGGCGAATTTGAGTTTTGG 450
|.|||||.||.||.|||||.|||||.|||||.||.||.||.||.||||||
BPUM_0180___y 401 GAGCGGCCAACTTGATTTCGGTTAAATCGTTCGGTGAGTTCGAATTTTGG 450
BSNT_00366___ 451 TTTGCGATGATTAAAATCGTGACGATTATCTTGATGATTATTGCGGGAAT 500
|||||.|||||.||.||.|||||||||||.||.|||||.|||||.||..|
BPUM_0180___y 451 TTTGCCATGATCAAGATTGTGACGATTATTTTAATGATCATTGCAGGTCT 500
BSNT_00366___ 501 CGGAATTATTTTCTTCGGTTTTGGCAATGGCGGAGATG-CGATCGGTTTG 549
.||.||||||||||||||.|||||.||||||||| |.| |.||.||.|||
BPUM_0180___y 501 AGGCATTATTTTCTTCGGATTTGGAAATGGCGGA-ACGCCTATTGGATTG 549
BSNT_00366___ 550 TCGAACCTGTGGTCACACGGGGGCTTCTTTGCAGGAGGTTTCTCAGGTTT 599
||.||.||||||.|||||||.||.||||||.||||.||.||..|.||.||
BPUM_0180___y 550 TCTAATCTGTGGGCACACGGTGGATTCTTTACAGGTGGATTTACCGGATT 599
BSNT_00366___ 600 CTTCTTTGCACTGTCTCTTGTCATTGCAGCCTATCAAGGAGTTGAGCTGA 649
|||.||||||.||||.||.||||||||.||||||||.||.||.|||||||
BPUM_0180___y 600 CTTGTTTGCATTGTCGCTCGTCATTGCTGCCTATCAGGGTGTAGAGCTGA 649
BSNT_00366___ 650 TCGGGATTACAGCGGGTGAAGCGAAGGACCCGCAAAACACGCTAAGAAAT 699
|.|||||||||||.|||||||||.|..|.||..||||.|||||.|..|||
BPUM_0180___y 650 TTGGGATTACAGCAGGTGAAGCGCAAAATCCAGAAAAGACGCTGACCAAT 699
BSNT_00366___ 700 GCGATTCAAAGTATTATCTGGCGTATTTTGATTTTCTACATTGGCGCTAT 749
||.||..|||||||.|||||||||||||||||||||||.|||||.||.||
BPUM_0180___y 700 GCCATCAAAAGTATCATCTGGCGTATTTTGATTTTCTATATTGGTGCGAT 749
BSNT_00366___ 750 TTTTGTGATCGTGACGGTGTATCCTTGGGATGAGCTCAACTCACTCGGAA 799
.|||||.||.|||||.|||||||||||||||.|||||||..|.||.||.|
BPUM_0180___y 750 CTTTGTCATTGTGACAGTGTATCCTTGGGATCAGCTCAATACCCTTGGCA 799
BSNT_00366___ 800 GTCCGTTTGTGTCTACGTTCTCGAAAATCGGAATTACGGCAGCGGCCGGC 849
||||.||||||.|.|||||..|||||||.||.|||||.||.||.||.||.
BPUM_0180___y 800 GTCCATTTGTGGCGACGTTTGCGAAAATTGGGATTACAGCTGCCGCTGGT 849
BSNT_00366___ 850 ATTATTAACTTTGTCGTAATTACTGCGGCAATGTCCGGCTGTAATAGCGG 899
||||||||||||||.||.|||||.||.||.||||||||||||||.||.||
BPUM_0180___y 850 ATTATTAACTTTGTTGTCATTACAGCAGCGATGTCCGGCTGTAACAGTGG 899
BSNT_00366___ 900 TATTTTCAGCGCGGGCCGCATGCTGTATACACTGGGTGTCAATGGACAAG 949
.||||||||.|||||.||.|||||.||||||||.|||||.||.||.||.|
BPUM_0180___y 900 GATTTTCAGTGCGGGACGTATGCTTTATACACTAGGTGTGAACGGGCAGG 949
BSNT_00366___ 950 CACCGAAATTCTTTAAGAAGATTTC-ACGCAATGGTGTGCCGCTGTATGG 998
|.||....|||||.|..||.||||| |.| ||||||||||||...|.|||
BPUM_0180___y 950 CGCCTGCTTTCTTCACCAAAATTTCGAAG-AATGGTGTGCCGTATTTTGG 998
BSNT_00366___ 999 CACAATTGCGGTGCTGATCGGTTTGGCTGTCGGCGTTGTACTGAACTATA 1048
.|||.|.||.||||||||.|||||.||..|.||.|||||.||.||.||..
BPUM_0180___y 999 GACATTCGCTGTGCTGATTGGTTTAGCAATAGGGGTTGTCCTCAATTACG 1048
BSNT_00366___ 1049 TCGCGCCGCCGAAGATCTTTGTCTATGTATACAGCGCAAGCGTGCTCCCA 1098
|.|||||.||.||.||.||.||||||||.||.||.||.||.||.||.||.
BPUM_0180___y 1049 TTGCGCCACCAAACATTTTCGTCTATGTGTATAGTGCGAGTGTACTTCCT 1098
BSNT_00366___ 1099 GGGATGATTCCCTGGTTTATCATTTTGATCAGTCATATCGGATTCAGAAA 1148
||.|||.|.||.||||||.|.||||||||.|||||||||||.||.|||||
BPUM_0180___y 1099 GGTATGGTGCCGTGGTTTGTGATTTTGATTAGTCATATCGGTTTTAGAAA 1148
BSNT_00366___ 1149 AGCGAAGGGTGCTGCATTAGATAAACATCCATTCAAAATGCCGTTTGCTC 1198
.||||||||.|||||..|.|||.|.|||||||||||.|||||..|.||||
BPUM_0180___y 1149 GGCGAAGGGAGCTGCGCTTGATCAGCATCCATTCAAGATGCCACTAGCTC 1198
BSNT_00366___ 1199 CTTTTACAAACTATTTCACGATTGCTTTCTTGCTGATGGTTCTGGTTGGC 1248
|.|||.|.||.|||.|.||.||.|.||||||.||||||||.||.||
BPUM_0180___y 1199 CGTTTTCTAATTATCTAACAATCGGTTTCTTACTGATGGTGCTTGT---- 1244
BSNT_00366___ 1249 A--TGTGGT--TTAACGATGATACTCGTATCTCCCTGATTGTAGGCGTGA 1294
| |.||.| ||||..|.|||||.|||||.||.|||||||| ||| .|
BPUM_0180___y 1245 ATTTATGCTCATTAATCAGGATACGCGTATTTCTCTGATTGT-GGC--AA 1291
BSNT_00366___ 1295 TT---TTCTTAGCGCTTGTGGTCA----TTAGTTATTATGTGTTTGGGAT 1337
|| |||||| .||||.|| | ||||.|..|||||.||||||||
BPUM_0180___y 1292 TTGGGTTCTTA---ATTGTAGT-AGCGCTTAGCTTCTATGTCTTTGGGAT 1337
BSNT_00366___ 1338 TGGCAAACGCA-------CGCAGGCCAATTTGACAAAAAGC-------GA 1373
.||.|||||.| || |||.||| ||
BPUM_0180___y 1338 CGGGAAACGGAAACCGATCG--------------AAACAGCTTCTTCTGA 1373
BSNT_00366___ 1374 ACAAGCAGCTGAATAA 1389
.|||.|.|...|||||
BPUM_0180___y 1374 TCAAACGGTAAAATAA 1389
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