Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01836 and BPUM_0220
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:21
# Commandline: needle
# -asequence dna-align/BSNT_01836___wprA.1.24716.seq
# -bsequence dna-align/BPUM_0220___wprA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01836___wprA-BPUM_0220___wprA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01836___wprA-BPUM_0220___wprA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01836___wprA
# 2: BPUM_0220___wprA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3013
# Identity: 1731/3013 (57.5%)
# Similarity: 1731/3013 (57.5%)
# Gaps: 671/3013 (22.3%)
# Score: 4308.0
#
#
#=======================================
BSNT_01836___ 1 ATG----AAACGCAG---AAA------------------------ATTAA 19
||| |||.|||| ||| ||.|.
BPUM_0220___w 1 ATGTTCAAAAAGCAGGTCAAATCCTGTGTGATCGTACTCATGGCCATCAT 50
BSNT_01836___ 20 GCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTT 69
.|||.| |.|||||||| |||
BPUM_0220___w 51 TCTCTG-TATGGCGGCA----TTA-------------------------- 69
BSNT_01836___ 70 TCTCCGGGAACCAAAGCCGCAGCGGCC------GGCGCGA---TCGATCA 110
||.|||..|.|.||.|||||.||| ||..|.| ||.||.|
BPUM_0220___w 70 ---CCTGGATACGAGGCAGCAGCTGCCAGTAAAGGTACAAATGTCAATGA 116
BSNT_01836___ 111 GGCGGCTGCTCTGG-----AAAACGGCAAAG--AGCAGACAGGCGCCAT- 152
.|| |..||| ||||.||..||| |.| .|||| |.|||
BPUM_0220___w 117 AGC-----CATTGGGTTAAAAAATGGTGAAGTCATC--TCAGG-GACATT 158
BSNT_01836___ 153 ---GAAGGAGCCGGAACAGGTGAAATGGTACAAAGTGACCCCGGGAGCAA 199
.||.||...|||| |.|..|||||||.||.|.||.||....|| |
BPUM_0220___w 159 ACAAAATGAAATGGAA---GAGTCATGGTACCAAATCACGCCATCTGC-A 204
BSNT_01836___ 200 C--------GGAAATTCAGAAACACTCACATATGGCACTGACCGTAAAGA 241
| |.||| |||.| ||||||||..|.|..|.||.||.|
BPUM_0220___w 205 CAAGAGGTGGTAAA---AGATA----CACATATGAAAATTTCTGTCAAAA 247
BSNT_01836___ 242 GTGATTCAGTATTGAAT--GTATCTGTATATCCAAGTAAGGAAAAAGCGC 289
||.|...|||.|| || |||||.||.|||||||||||.||.|..|||.
BPUM_0220___w 248 GTAAACAAGTGTT--ATCCGTATCGGTCTATCCAAGTAAAGACAGGGCGA 295
BSNT_01836___ 290 TTAAAGATGAAAC--GTTTGAGATGTACCGTTCTTTCACAGCGGACGA-- 335
|.||.|||||.|| .||..||| ||.||| |.|||| |
BPUM_0220___w 296 TGAAGGATGATACTTATTCAAGA--TATCGT---------GTGGAC-ACT 333
BSNT_01836___ 336 -----TGGAAAAAGCGAAGTCATTTTTCCATACGCGTGGAGCGGCCCTTA 380
||||.|.|..||.||....||.||..|.||.|||...||.|||||
BPUM_0220___w 334 GCCAGTGGAGAGACAGAGGTAGACTTCCCGCATGCATGGTCAGGTCCTTA 383
BSNT_01836___ 381 CTATGTAAAAGTTGAATACCTCGG---AGAAGAAG--AGCC----AGAGG 421
.|||||.|||||....|||.|.|| |||.|||| |||| .||||
BPUM_0220___w 384 TTATGTCAAAGTGCTCTACTTAGGGTCAGAGGAAGACAGCCGTGACGAGG 433
BSNT_01836___ 422 ACGACGGAACGGCAGAAGCAGCTGCAGAAGCCAAGTATACGATTGGGTAT 471
|.|| ||| |||||.| |||||.||.||||||
BPUM_0220___w 434 AGGA-GGA--------------TGCAGCA------TATACAATCGGGTAT 462
BSNT_01836___ 472 AAAGGCACCAAAAAACAGCCGTCAGA------TTT---AGAAGAGGAAGA 512
|||||..|.||....|.|||.||.|| ||| ||||||.||.||
BPUM_0220___w 463 AAAGGAGCTAACCTTCCGCCTTCTGAACCTGTTTTCCCAGAAGATGATGA 512
BSNT_01836___ 513 AGCTTGTCCGGTTGAAATGAGTGTCGATCAGA-AGAAATCAGGAAAA--- 558
|.||||.||.|.| ||.|.| |||| ||||
BPUM_0220___w 513 ---------GTTTGACATCATT----ATTATAGAGAA------AAAATAC 543
BSNT_01836___ 559 -GGC-----ATCCTGGATAAGTTGAGAGCGATTCG------TGATGAGCA 596
||| ||.||..| |.|.||||| |||.||..|
BPUM_0220___w 544 GGGCGCGAAATTCTCCA---------ATCAATTCGTACAATTGAAGATAA 584
BSNT_01836___ 597 GC-------TGAGCCAAACAGCAGAAGG-CAAAGAA-CTGA--CAAGTCT 635
.| || |||||.||.|.|| | |||| |||| |.|||..
BPUM_0220___w 585 ACGTTTTAATG----AAACACCAAATGGTC--AGAAGCTGAGCCGAGTGC 628
BSNT_01836___ 636 TT---ATTACAAAGCAGCACCGTTTATCGTTGCAAAACTCGCA-CTCAAT 681
|| |..|||||| ||||||.|| ||.|||.| ||| ||
BPUM_0220___w 629 TTCAAAAAACAAAG-----CCGTTTCTC-------AAATCGAAGCTC-AT 665
BSNT_01836___ 682 AAAACAGCAAGAAATG-------AAATCTAT-CAGGATC--TTG-TGACA 720
.||||| ||.||||| |||..||| || ||| ||| |||||
BPUM_0220___w 666 CAAACA--AAAAAATGAGCAACAAAAGGTATACA--ATCATTTGCTGACA 711
BSNT_01836___ 721 TTAAAG---CCGTTATTTGACGATGTGTCAG-AAAACGGAGCA------- 759
|||||| |.|.||..|||||..| || ||||.||.|||
BPUM_0220___w 712 TTAAAGTCACTGCTAAATGACGTAG----AGAAAAATGGTGCATTTAGCG 757
BSNT_01836___ 760 -TCATCTTCGTATAAGGTCACTGAAAAGGATCAAAAAGCAATCAACCG-- 806
||||.|| ||.||.||.||.||.|||.|.||.|| |||
BPUM_0220___w 758 GTCATATT--------GTGACAGAGAAAGAACAACAGGCGAT---CCGTT 796
BSNT_01836___ 807 -GCTATATGATAAAGCTTTACAA-----TCAGTCCCGTC-ATTCCTTAAA 849
.||.|.|||| |.||| ||| ..|||||.|.| ||| |.|||
BPUM_0220___w 797 CCCTTTTTGAT-ATGCT---CAAAGGAGCAAGTCCTGCCTATT--TAAAA 840
BSNT_01836___ 850 GAGGAGATAAAGAAACA---AGCGGACCGACTAAATATGAAGCAGCTGCA 896
.||||..| ||||.|| ||...||.||.|..| ||..|.|||||..|
BPUM_0220___w 841 AAGGAATT--AGAAGCAGTGAGTCAACAGATTGGA-ATCGATCAGCTTGA 887
BSNT_01836___ 897 AGGCAAAACAGCCGGAGCCATTT---TAACAGAAAA-CAATA--TTGCAG 940
|||.|||.|...||| || ||..|||||| |||.| |||.|
BPUM_0220___w 888 AGGAAAATCGATCGG------TTATGTATTAGAAAAGCAAAAGCTTGTA- 930
BSNT_01836___ 941 CAAA-AAGTGAA-GTTCAGACAACAAAGGTTATTTTCAAGGTAAAGGA-- 986
||| |||.||| ||..||||.|..|||.|||||||.||..|||||||
BPUM_0220___w 931 -AAAGAAGAGAATGTGAAGACGAATAAGATTATTTTTAAACTAAAGGATG 979
BSNT_01836___ 987 --CAATAAAAGCCTCTCA---TCCGTACATAATGAA-ATGAAGGGCTTTT 1030
| |||..|| ||| |.|| |.||.||| |||||..|||.|
BPUM_0220___w 980 GCC----AAACACT-TCAATCTGCG---AAAAAGAAGATGAAAAGCTAT- 1020
BSNT_01836___ 1031 CTGCAAGCGCGCAATCGAAAAAA-------GACATATC-CAATGTGAAAA 1072
|.||||.||.||| ||| ||| || ||.|..|
BPUM_0220___w 1021 ----------GGAATCCAAGAAAACCGCGTGAC--ATCGCA--GTCAGTA 1056
BSNT_01836___ 1073 AGGC--------AAAGAAACTGTTTGACAATCTGTAT-TCATTTGAACTT 1113
||.| ||||.|| ||||| || |.|||..|.
BPUM_0220___w 1057 AGTCCTTTGTTTAAAGGAA-------------TGTATGTC-TATGATGTG 1092
BSNT_01836___ 1114 CC-GAAAGACGAGAAACAGAAC-GGCG---CATATACGGCAAGCGCCAAA 1158
|| |.|.|.|.||||.||| | ||.| |.|..|..|||.|| ||
BPUM_0220___w 1093 CCAGCAGGGCAAGAATCAG--CTGGAGAGACTTTAAAAGCAGGC----AA 1136
BSNT_01836___ 1159 AG----GGTCAAAAGCGCTGCTGCGACA-CTATCCAAGATGTCCAATGTA 1203
|| |.||||||||.|||| |.||.| ||.||||..|||.|.|||||.
BPUM_0220___w 1137 AGCTGTGATCAAAAGCACTGC-GAGAAAGCTGTCCAGTATGCCGAATGTT 1185
BSNT_01836___ 1204 GAGTTTGCGGAACCCGTGCAGGAATACAAAAGCCT----GGCA------A 1243
||.|||||.||.||.||.| ||.||| .||| |
BPUM_0220___w 1186 GAATTTGCAGAGCCTGTTC----------AAACCTATCGTGCATTGAGCA 1225
BSNT_01836___ 1244 ACGACATTCAGTACCCTTATCAATGGCCGCTTAAAAACAACGGTGAAAAC 1293
|.||..|.|||||....||.||||||||.||.|||||||.|||..|||||
BPUM_0220___w 1226 ATGATGTGCAGTATGGATACCAATGGCCTCTGAAAAACAGCGGGCAAAAC 1275
BSNT_01836___ 1294 GGCGGTGTCAAAAATGCG--GATGTGAAATATGAGC--CTGCCAACACAT 1339
.||| |..|||||.||| ||||||||.|.|||.| .|| ||.||||
BPUM_0220___w 1276 AGCG--GGAAAAAAGGCGCTGATGTGAAGTTTGATCAAATG--AATACAT 1321
BSNT_01836___ 1340 TGCTGTCCAAACGCAAGCTTAACGATACACTCATTGCAGTAGTAGACACA 1389
||.|...||.|.||||..|.||..|.|||.|.|||||.||.||.||.|||
BPUM_0220___w 1322 TGATTGGCACAAGCAAAATGAAGCAAACATTGATTGCTGTTGTGGATACA 1371
BSNT_01836___ 1390 GGCGTTGACAGCACGCTTG-CCGATTTAAAAGGAAAAGTAAGAACAGATC 1438
||.||.||||| .||.||| |.|||.|||..||.|..||..|.||.||..
BPUM_0220___w 1372 GGTGTAGACAG-TCGTTTGACTGATCTAAGCGGGACTGTTCGTACGGACT 1420
BSNT_01836___ 1439 TCGGACACAATTTTGTCGGACGGAATAACAATGCAATGGATGATCAGGGG 1488
|.||....|||.|..|.|||||.||.||..||||.||.|||||..|.||.
BPUM_0220___w 1421 TAGGTGCGAATCTCATTGGACGAAACAAAGATGCGATTGATGACAATGGA 1470
BSNT_01836___ 1489 CATGGGACGCATGTCGCAGGCATTATTGCGGCCCAAAGC-GATAACGGCT 1537
||.||.||||||||.||.|||||.|||||.| |.||||| |||||....|
BPUM_0220___w 1471 CACGGTACGCATGTGGCGGGCATCATTGCCG-CAAAAGCTGATAATCATT 1519
BSNT_01836___ 1538 ATTCAATGACTGGATTGAATGCCAAAGCAAAA-------ATCATCCCTGT 1580
|.||||||.|.||..|.||| |||.| |||||.||.||
BPUM_0220___w 1520 ACTCAATGGCAGGTCTCAAT-------CAACATACGGGCATCATTCCGGT 1562
BSNT_01836___ 1581 AAAAGTGCTTGATTCCGCAGGTTCCGGAGATACTGAACAAATTGCTCTCG 1630
.||.|||||.|||.|....||||..||||||||.||.||.|||||.||.|
BPUM_0220___w 1563 GAAGGTGCTGGATGCTTATGGTTTTGGAGATACAGAGCATATTGCACTTG 1612
BSNT_01836___ 1631 GCATCAAATATGCTGCTGACAAAGGAGCAAAGGTGATTAATTTAAGTTTA 1680
|.|||||..||||.|..||.|||||.||||||||.||.||..|.|||.|.
BPUM_0220___w 1613 GAATCAAGCATGCAGTGGATAAAGGCGCAAAGGTCATCAACATGAGTCTT 1662
BSNT_01836___ 1681 GGCGGAGGCTACAGCCGCGTGCTTGAATTTGCTTTGAAGTACGCAGCTGA 1730
|||||...|||||||||.|||.|.||||.|||..||||.|||||.||..|
BPUM_0220___w 1663 GGCGGCTACTACAGCCGGGTGATCGAATATGCAATGAACTACGCGGCCCA 1712
BSNT_01836___ 1731 CAAAAATGT-CTTGATTGCCGCAGCCAGCGGGAATGATGG------AGAA 1773
.|.|||||| ||.| |.|.||..||.||.||.|||||||| ||||
BPUM_0220___w 1713 AAGAAATGTACTAG-TGGTCGTGGCGAGTGGAAATGATGGCGTTCCAGAA 1761
BSNT_01836___ 1774 AATGCCTTATCTTATCCTGCATCTTCTAAATATGTGATGTCAGTCGGCGC 1823
|..|.| ||||||||..|.||.||.||.|..|||.|..|.||.||
BPUM_0220___w 1762 ATGGGC------TATCCTGCGACATCAAAGTACGCAATGGCCATTGGTGC 1805
BSNT_01836___ 1824 AACGAACCGCATGGATATGACCGCTGATTTCTCTAACTATGGAAAAGGTC 1873
||..|||||.||||||||..|.|||||.|||||.|.||.|||.|||||.|
BPUM_0220___w 1806 AAGCAACCGTATGGATATTGCTGCTGAATTCTCAAGCTTTGGTAAAGGAC 1855
BSNT_01836___ 1874 TGGACATCTCTGCTCCAGGGTCTGATATCCCGAGCTTAGTGCCGAACGGA 1923
||..|||.|||||.|||||.||||||||.||.||||||.||||..|.||.
BPUM_0220___w 1856 TGAGCATGTCTGCACCAGGATCTGATATTCCAAGCTTAATGCCAGATGGG 1905
BSNT_01836___ 1924 AATGTCACGTACATGAGCGGAACGTCTATGGCGACGCCGTATGCTGCCGC 1973
||||||.|.||..|||||||.||.||.||||||||.||.||||..||.||
BPUM_0220___w 1906 AATGTCTCATATCTGAGCGGGACATCAATGGCGACACCATATGTGGCAGC 1955
BSNT_01836___ 1974 TGCTGCAGGATTGCTGTTTGCTCAAAATCC------TAAGCTGAA--AAG 2015
.||.||||||||.|||.||.||.||||||| .||||.||| |||
BPUM_0220___w 1956 GGCAGCAGGATTACTGCTTTCTAAAAATCCAACCTTGAAGCCGAATCAAG 2005
BSNT_01836___ 2016 AACAGAAGTTGAGG-ATATGTTGAAAAAGACGGCAGATGATATTTCCTTT 2064
|.||| ||||.|||.|||..||.||.|||.||||.||||||
BPUM_0220___w 2006 ---------TAAGGAATATTTTGCAAAGCACAGCCGATAATATCTCCTTT 2046
BSNT_01836___ 2065 GAAAGTGTCGATGGCGGAGAAGAAGAGTTGTATGACGATTATGGCGATCC 2114
..|..|||.||||||..|||.||.|..||.|||||.||..|||..||.||
BPUM_0220___w 2047 ACATCTGTTGATGGCACAGATGACGTTTTCTATGATGAAAATGAAGAGCC 2096
BSNT_01836___ 2115 GATTGAAATTCCGAAGACACCTGGTGTAGACTGGCAT-TCAGGCTACGGG 2163
.||||....||||||.|..||.||.||.||.||| || .||||..|.||.
BPUM_0220___w 2097 TATTGTCGATCCGAAAATTCCAGGCGTCGATTGG-ATGACAGGACATGGC 2145
BSNT_01836___ 2164 CGGCTGAACGTCA---------TGAAG-GCTGTCAGCGCAGCTGATTTA- 2202
.|.|||||.| || |.||| |||||| ||..||
BPUM_0220___w 2146 AGACTGAATG-CATTTGCTGCTTTAAGTGCTGTC---------GAACTAA 2185
BSNT_01836___ 2203 ---CAGCTTAAGGTCAACAAGCTGGA----AAGCACTCAAACAGCTGTCA 2245
||.|| ||.|.|||..|||| .|||| ||||| || ||.|
BPUM_0220___w 2186 ATGCATCT----GTGAGCAAAGTGGAGGATCAGCA-TCAAA-AG--GTGA 2227
BSNT_01836___ 2246 GAGGAAACGCGAAGGAAGGCAC-------ACT---TATCGAGGTGATGAA 2285
.|||.||.||.||||..|||.| .|| |||.|||||
BPUM_0220___w 2228 CAGGTAAAGCAAAGGCTGGCGCTGCTATTTCTGTGTATAGAGGT------ 2271
BSNT_01836___ 2286 CGGCAAAAA----GAAACTCGGCAGCGCCAAAGCCGGAAAAGACAATG-- 2329
|||| | ||.||.|..|.||.|||.||.||| ||||
BPUM_0220___w 2272 -----AAAACCCTG---CTTGGAACAGGCACAGCGGGCAAA---AATGGA 2310
BSNT_01836___ 2330 -CGTTCAAGGTTAATATCGCGCCT-----CAAAAACAGGATCAAGTACTG 2373
|.||.|..||.||.||...||.| |||||||| ||||.||
BPUM_0220___w 2311 ACCTTTAGTGTGAAGATTAAGCATCAGAACAAAAACA-----AAGTTCT- 2354
BSNT_01836___ 2374 TATGTGAAAGCAA-----CAAAAGG-----------CGATGC-GAAAACA 2406
|.|.|..|| ||||||| |||.|| .||||||
BPUM_0220___w 2355 ----TCACATTAAGATTTCAAAAGGAAAGGCAGCAACGACGCTCAAAACA 2400
BSNT_01836___ 2407 TCGTATAAAGTTGTCGTCGTCAAAGGAAAACCTTCCGGCACACCGAAAGT 2456
||||||...|||||.|||.|..|.|.||..||||||||
BPUM_0220___w 2401 ------------GTCGTCAAAAAAGGCAAAGCACCAGCCAAGCCGAAAGT 2438
BSNT_01836___ 2457 ----AAACG---CGGTGAAAACGAAGGATACGGCAGTAAAAGGGA----- 2494
||| | ||||.||||..| |.||| ||.|||||||
BPUM_0220___w 2439 GGGCAAA-GTAACGGTCAAAAGTA---AAACG---GTCAAAGGGACTGCG 2481
BSNT_01836___ 2495 -----AGGCAAACAGCAAAGCGATGATCAGAGTGAAAAACAAATCAAAGA 2539
||| |..||..||.|.|||||||||.||||||||||
BPUM_0220___w 2482 GGTGCAGG----------ATTGACCATTAAAGTGAAAAATAAATCAAAGA 2521
BSNT_01836___ 2540 AAGTCATTGCTTCTGCCAAAGCTGAC-GCAAAA------------GGAAC 2576
||||||| |||| || |.|||| ||..|
BPUM_0220___w 2522 AAGTCAT---------CAAA----ACAGTAAAAACAAATAACAAGGGCGC 2558
BSNT_01836___ 2577 GTTTTCGGTGAAAATCAAAAAACAAAAAGCCGGAACGGTGCTGTACGTCA 2626
.|||.|.|...||||.|||...|||||||||..|||.||..||||.||.|
BPUM_0220___w 2559 ATTTACTGCCCAAATAAAACCGCAAAAAGCCAAAACAGTCTTGTATGTGA 2608
BSNT_01836___ 2627 CGGCTGCGGAT-ACAGATAAAAAAGAAAGCAAGGAAGCAAAAGTTGTTGT 2675
|||||.|.||| ..||| ||||.|||||||||.|..|..|||||||||||
BPUM_0220___w 2609 CGGCTTCAGATGTGAGA-AAAAGAGAAAGCAAAGCGGTGAAAGTTGTTGT 2657
BSNT_01836___ 2676 TG---AAAAGTAA 2685
|| ||||||||
BPUM_0220___w 2658 TGTGAAAAAGTAA 2670
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