Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00426 and BPUM_0223

See Amino acid alignment / Visit BSNT_00426 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:17
# Commandline: needle
#    -asequence dna-align/BSNT_00426___ybgF.1.24716.seq
#    -bsequence dna-align/BPUM_0223___ybgF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00426___ybgF-BPUM_0223___ybgF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00426___ybgF-BPUM_0223___ybgF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00426___ybgF
# 2: BPUM_0223___ybgF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1446
# Identity:     993/1446 (68.7%)
# Similarity:   993/1446 (68.7%)
# Gaps:         141/1446 ( 9.8%)
# Score: 3476.0
# 
#
#=======================================

BSNT_00426___      0 --------------------------------------------------      0
                                                                       
BPUM_0223___y      1 ATGGAACAAGCAAAAGATCAGTCACAACAATATCAACGAAAAATGACGAG     50

BSNT_00426___      1 -------------ATGCTTTCCTTGGGAGGTGTCATCGGAACCGGGCTGT     37
                                  ||||||||..|.||.||.||.||.||.||.|||||.|
BPUM_0223___y     51 CCGCCACCTGTTCATGCTTTCTCTAGGCGGCGTGATTGGCACAGGGCTCT    100

BSNT_00426___     38 TTTTAAGCTCAGGTTATACCATTCAGCAAGCAGGCCCGGCCGGAACGATA     87
                     ||||||||||.||.||||||||..|.||||||||.||.||.|||||.||.
BPUM_0223___y    101 TTTTAAGCTCTGGGTATACCATCAATCAAGCAGGACCCGCAGGAACAATC    150

BSNT_00426___     88 CTCGCCTA-CTTAGTCGGTGCCGGC----ATCGTCTATCTGGTCATGCTC    132
                     ||.||||| ||| |||||    |||    ||.||.||.||.||.|||||.
BPUM_0223___y    151 CTTGCCTATCTT-GTCGG----GGCATTAATTGTGTACCTCGTGATGCTT    195

BSNT_00426___    133 TGCCTCGGTGAGCTGTCAGTCGCCATGCCTGTGACCGGCGCCTTTCACAC    182
                     ||..|.||.||.|||||.||.||||||||.||.||.||.||.|||||.||
BPUM_0223___y    196 TGTTTAGGCGAACTGTCTGTTGCCATGCCGGTTACAGGGGCATTTCATAC    245

BSNT_00426___    183 CTATGCAGCCAAATACATAGGGCCGGGCACCGGATTTACGGTCGCTTGGC    232
                     .||||||.|.||.|||||.||.||.|||||.||.|..||.||.|||||||
BPUM_0223___y    246 GTATGCAACAAAGTACATTGGACCCGGCACAGGCTACACAGTTGCTTGGC    295

BSNT_00426___    233 TGTACTGGCTGACATGGACCGTGGCATTGGGATCAGAATTCACAGCAGCC    282
                     |||||||||||||||||||.||.|||.|.||.||.|||||.|||||.||.
BPUM_0223___y    296 TGTACTGGCTGACATGGACAGTCGCACTCGGGTCGGAATTTACAGCGGCA    345

BSNT_00426___    283 GGCCTGTTAATGCAGCGCTGGTTCCCCCATACATCGGTTTGGATGTGGAG    332
                     ||.||.||||||||||||||||||||..|.||||||||||||||||||||
BPUM_0223___y    346 GGGCTTTTAATGCAGCGCTGGTTCCCAGACACATCGGTTTGGATGTGGAG    395

BSNT_00426___    333 TGCCGTCTTTGCGCTGTTC--ATTTTCTTGCTTAACGCATTTTCGGTCAA    380
                     .|.||||||  ||||.|||  ||.||.||.||.||.||.|||.|.||.||
BPUM_0223___y    396 CGGCGTCTT--CGCTCTTCTTATCTTTTTACTCAATGCGTTTACAGTTAA    443

BSNT_00426___    381 GTTTTTCGCTGAATCAGAATTTTGGTTTTCCAGCATCAAAGTATTAGCCA    430
                     ||||||.||.||||||||.|||||||||||||||||.||||||.|.||.|
BPUM_0223___y    444 GTTTTTTGCAGAATCAGAGTTTTGGTTTTCCAGCATTAAAGTAATGGCTA    493

BSNT_00426___    431 TTGTATTATTTATTCTTTTAGGCGGCTCTGCCATGTTTGGCATCATTCCG    480
                     ||.|..|.||||||.||.|.|||||..||||.|||||||||.|.|||||.
BPUM_0223___y    494 TTATTCTCTTTATTATTCTTGGCGGAGCTGCGATGTTTGGCTTGATTCCA    543

BSNT_00426___    481 ATCAAAGGCGGAGAAGCCGCTCCGATGCTGTCCAACTTCA-TGGCGGAAG    529
                     .|.||||||||.||||||||||||.|..|.||.||||||| ||| |||||
BPUM_0223___y    544 TTAAAAGGCGGTGAAGCCGCTCCGTTCTTTTCTAACTTCACTGG-GGAAG    592

BSNT_00426___    530 GCGGGCTTTTTCCAAATGGATTTGTCCCGATTTTGATGACGATGCTGTCC    579
                     ||||.|||||.|||||.||.|||.|.||.|||||.|||||||||||..||
BPUM_0223___y    593 GCGGTCTTTTCCCAAACGGCTTTTTACCAATTTTAATGACGATGCTTGCC    642

BSNT_00426___    580 GTTAATTTTGCCTTTTCGGGAACGGAACTAATCGGAATCGCAGCCGGTGA    629
                     ||.|||||.||.|||||.||.|||||..||||.||.||.||.||.|||||
BPUM_0223___y    643 GTCAATTTCGCTTTTTCAGGTACGGAGTTAATTGGGATTGCTGCGGGTGA    692

BSNT_00426___    630 AAGCGTTGATCCTGACAAGACAATACCAAAAGCGATTAAAACAACGGT-C    678
                     ||||||..||||||||.||||.||.||||.||||||....|||||.|| |
BPUM_0223___y    693 AAGCGTCAATCCTGACGAGACCATTCCAAGAGCGATCCGCACAACCGTAC    742

BSNT_00426___    679 TGGCGTCTCTCACTCTTCTTTGTCGGAACAATTTTTGTGCTGTCAG--GG    726
                     | ||||||.....|.||.||.||.|||||||   |.|||.|.|.||  ||
BPUM_0223___y    743 T-GCGTCTTGTTTTGTTTTTCGTTGGAACAA---TCGTGGTCTTAGCTGG    788

BSNT_00426___    727 C-TGATTCCGATTCAAGATGCAGGTGTCATCAAAAGCCCGTTTGTCGCTG    775
                     | ||||.||..|..||||.||.||.||.||||||||.||.|||||.|..|
BPUM_0223___y    789 CTTGATCCCAGTAGAAGAAGCTGGGGTGATCAAAAGTCCATTTGTTGTGG    838

BSNT_00426___    776 TCTTTGACAGAGTCGGTGTACCATACGCAGCCGATATCATGAACTTTGTT    825
                     |.|||||..|..|.||..|.|||||.||.||.|||.|||||||.|||||.
BPUM_0223___y    839 TGTTTGATCGCATTGGGATTCCATATGCCGCAGATTTCATGAATTTTGTC    888

BSNT_00426___    826 ATCCTGACAGCGATCCTGTCAGCGGCTAATTCCGGACTCTACGCTTCTTC    875
                     ||..|||||||||||.|.||.||.||.||.||.|||||.||.||.|||||
BPUM_0223___y    889 ATTTTGACAGCGATCTTATCTGCCGCAAACTCTGGACTATATGCGTCTTC    938

BSNT_00426___    876 CCGGATGCTGTGGTCTTTATCAAAAGAAAAAACGCTTCATCCGACATTTG    925
                     |||.|||||.|||||..|.||..|.|||...||.||.|.|...|.|||.|
BPUM_0223___y    939 CCGTATGCTTTGGTCACTTTCTGAGGAACGGACACTGCCTAAAAAATTGG    988

BSNT_00426___    926 CAAAGCTGACGTCAAAAGGAACCCCTTTTAACGCGCTGGTGTTCAGCATG    975
                     |.||||||||.||||||||||..|||||.||.||.|||.|.||.||.|||
BPUM_0223___y    989 CGAAGCTGACATCAAAAGGAATTCCTTTGAATGCACTGATTTTAAGTATG   1038

BSNT_00426___    976 ATCGGCGGCATTCTGTCGTTGCTGTCCAGCGTATTTGCGCCAGACACTGT   1025
                     ||||||||.|||||.||.|||.|.||.||.||..|.||.|||||.||.||
BPUM_0223___y   1039 ATCGGCGGGATTCTTTCTTTGTTATCAAGTGTCATCGCACCAGAAACGGT   1088

BSNT_00426___   1026 ATACGTTGTGCTCGTGTCGATTTCCGGTTTTGCCGTCGTTGTCGTGTGGA   1075
                     .|||.||||.||.||.|||||.||.||..|||||||.||..|||||||||
BPUM_0223___y   1089 CTACCTTGTCCTTGTTTCGATCTCAGGACTTGCCGTTGTGATCGTGTGGA   1138

BSNT_00426___   1076 TGGGAATCGCTGCTTCTCAATTCATGTTCAGAAAACGTTATAT---CGAA   1122
                     ||||.||.|||||.||.|||||.|||||..|.|||||||.|.|   .|||
BPUM_0223___y   1139 TGGGGATTGCTGCCTCACAATTTATGTTTCGGAAACGTTTTTTACAGGAA   1188

BSNT_00426___   1123 GCGGGAAACAAGGTTACTGATTTGAAATAC----AGAACCCCTTTGTATC   1168
                     |..|||   |||.||..||||.|    |.|    .|||||||..|.||||
BPUM_0223___y   1189 GGCGGA---AAGCTTCATGATCT----TTCCTTTCGAACCCCGCTCTATC   1231

BSNT_00426___   1169 CGTTCGTGCCGATTGCTGCGTTCCTGTTATGCCTGGCTTCCGTTGTTGGC   1218
                     |..|.||.||||||||.||.|||.|..|.||.||.||.||.||..|.|||
BPUM_0223___y   1232 CAGTGGTTCCGATTGCAGCCTTCTTCCTGTGTCTTGCCTCTGTGATCGGC   1281

BSNT_00426___   1219 ATTGCCTTTGATCCGAATCAAAGAATCGCACTCTAT-TGCGGCGTTCCAT   1267
                     ||||||||||||||.|||||..|.||.||.|| ||| ||||||.|.||.|
BPUM_0223___y   1282 ATTGCCTTTGATCCAAATCAGCGGATTGCCCT-TATCTGCGGCATCCCTT   1330

BSNT_00426___   1268 TTATGGCCATTTGCTATGCAATATATTATGT----------------AAA   1301
                     |.||.||.||.||||||||....||||||||                |||
BPUM_0223___y   1331 TCATCGCGATCTGCTATGCTGCCTATTATGTGACAGCTTGGATTCAGAAA   1380

BSNT_00426___   1302 AAACCGCAAAAGCCAGCCGGCTGCTGATATGACTTATTCAAAATAA   1347
                     ||||...||.|.|       |||.|| |||.|              
BPUM_0223___y   1381 AAACGTGAAGAAC-------CTGGTG-TATAA--------------   1404


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