Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03911 and BPUM_0237
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_03911___adhB.1.24716.seq
# -bsequence dna-align/BPUM_0237___adhB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03911___adhB-BPUM_0237___adhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03911___adhB-BPUM_0237___adhB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03911___adhB
# 2: BPUM_0237___adhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1228
# Identity: 774/1228 (63.0%)
# Similarity: 774/1228 (63.0%)
# Gaps: 185/1228 (15.1%)
# Score: 2160.0
#
#
#=======================================
BSNT_03911___ 1 ATGAAGGCAGTAACGTATCAAGGCATTAAAAAT---GTTGTTGTCAA--- 44
.|||..||.||.|||||.||||| .|||||| .|||..||.||
BPUM_0237___a 1 GTGAGAGCTGTTACGTACCAAGG---GAAAAATAGCATTGCAGTGAAGAA 47
BSNT_03911___ 45 ---AGATGTCCC--CGATCCAAAGATTGAAAAATCCGATGACATGAT--- 86
|||||..|| ||||.| |||||.|..|| ||||..||.||
BPUM_0237___a 48 AGTAGATGCGCCATCGATTC-AAGATCGGGAA----GATGTGATCATCCG 92
BSNT_03911___ 87 TATAAAGGTCACCAGTACAGCCATTTGCGGATCAGATTTACATTT-AATC 135
.|||| ||.|| |||||||||||.|||||.||||||||||| .|||
BPUM_0237___a 93 AATAA----CATCA--ACAGCCATTTGTGGATCTGATTTACATTTGTATC 136
BSNT_03911___ 136 CATGGA--TTC---ATTCCTAATATGCAAGAAGACTATGTCATCGGCCAT 180
...||| ||| .|||| ||| .|.||||||.||.||.|||
BPUM_0237___a 137 AGGGGAATTTCCCGCTTCC-AAT--------CGGCTATGTGATTGGGCAT 177
BSNT_03911___ 181 GAACCGATGGGAATCGTCGAAGAAGTTGGTTCTGGTGTGACTAAACTAAA 230
||.||.|||||.||.||.||.||||||||..|.|.|||.||...|.||||
BPUM_0237___a 178 GAGCCAATGGGGATTGTGGAGGAAGTTGGCCCGGATGTTACGGCAGTAAA 227
BSNT_03911___ 231 AAAGGGAGATCGGGTAATTATTCCCTTTAATATAGCATGCGGGGAATGCT 280
|||||||||.||.||..|||||||.||||...|.|||||.|||.|||||.
BPUM_0237___a 228 AAAGGGAGACCGTGTCGTTATTCCATTTACCGTTGCATGTGGGCAATGCC 277
BSNT_03911___ 281 TTTTTTGTAAAAACCAGCTGGAAAGCCAATGCGATCAGTCTAA------- 323
..|.||||.|..||||..|.|||||.||||||||..|.||.||
BPUM_0237___a 278 AATATTGTCATCACCACTTAGAAAGTCAATGCGACAACTCAAACCCGCAC 327
BSNT_03911___ 324 TGACAAT--GGGGAAATGGGCGCTTATTTCGGCTAT--TCAGGGCAAACA 369
| ||.|| ||| |||.| .|||.||.||| |.|| |||.|
BPUM_0237___a 328 T-ACGATTCGGG----TGGAC----TTTTTGGATATAGTGAG---AAATA 365
BSNT_03911___ 370 -GGCGGTTATCCAGGCGGGCAAGCTGAATATTTAAGAGTGCCGTTTGCGA 418
|||..||||||.||.||.||.||.|||||||||.|.|||||.||||..|
BPUM_0237___a 366 TGGCAATTATCCTGGAGGACAGGCAGAATATTTACGCGTGCCTTTTGGCA 415
BSNT_03911___ 419 ATTTTACCCATTTTAAAATCCCTGAATCTTGTGA---GGAACCCGATGAG 465
|||..||.|..|||||.|||||.||...|||||| ||| .|||||.
BPUM_0237___a 416 ATTACACTCCGTTTAAGATCCCAGATGATTGTGAGCTGGA---GGATGAA 462
BSNT_03911___ 466 AAATTAAGCGTGATT----GCCGATG-----CCATGACCACCGGCTTTTG 506
.|||| ||..|| .|.|||| ||| ||.|.||..||
BPUM_0237___a 463 CAATT----GTTGTTCTTATCGGATGTTCTTCCA-----ACTGCCTACTG 503
BSNT_03911___ 507 GAGTGTGGATAATGCCGGCGTAAAAAAAGGCGATACAGTTATCGTTCTCG 556
||||||.||..||||.||.||.||||||||.|||||.||.||.||..|.|
BPUM_0237___a 504 GAGTGTTGAGCATGCTGGTGTGAAAAAAGGTGATACGGTCATTGTGTTAG 553
BSNT_03911___ 557 GCTGCGGGCCAGTCGGCCTGTTTGCGCAAAAATTTTGC-TGGCTAAAGGG 605
||||.||.||.||.||.||..|.|||||..|| ||||| ||||.|||.||
BPUM_0237___a 554 GCTGTGGACCTGTTGGACTAATGGCGCAGCAA-TTTGCATGGCAAAAAGG 602
BSNT_03911___ 606 CGCAAAACGCGTCATAGCAGTTGACTATGTAAACTATCGCTTACAGCATG 655
.|||.||||.||.||.||.||.||.|| .||.|.||||.|..||
BPUM_0237___a 603 GGCAGAACGTGTGATTGCGGTCGATTA-------CATTGATTACCGTCTG 645
BSNT_03911___ 656 CGAAACGCACAAACAAA--------GTAGAAATCGTAAACTTT---GAAG 694
|||.|.||| |||||.| ||||||.|..|..|.||| ||||
BPUM_0237___a 646 CGACATGCA-AAACAGATGAGCGGTGTAGAAGTATTTGATTTTACAGAAG 694
BSNT_03911___ 695 A-----CCAT--GAGAATACAGGAAGTTATTTAAAGGAAATCACGAAAGG 737
| .||| ||||| || .||||||||..|.||.||.||
BPUM_0237___a 695 ATCCCGACATGGGAGAA-AC---------GTTAAAGGAGCTGACCAAGGG 734
BSNT_03911___ 738 CGGAGCGGATGTAGTCATTGACGCTGTTGGGATGGATGGTA--AAATGAG 785
||||||.|||||.||.||.|||..|||.||.|||||.||.| ||.|.|.
BPUM_0237___a 735 CGGAGCCGATGTTGTAATCGACTGTGTGGGAATGGACGGGAAGAAGTCAC 784
BSNT_03911___ 786 CGATCTCGAGTTCCTTGCCAGCGGA---TTAAAGCTTCATGGCGGAACGA 832
|| ||.||.....||| |||.|| |.||| ||.||.||.|||||.|
BPUM_0237___a 785 CG--CTTGAAAAAATTG--AGCAGAAGCTCAAA-CTGCAAGGTGGAACAA 829
BSNT_03911___ 833 T--GAGTGCATTGGTC--ATTGCCTCCCAAGCTGTTCGCAAAGGAGGAAC 878
| || ..||| || ||||||.|..||||.||.||||||.|.|||||
BPUM_0237___a 830 TCGGA-CCCAT---TCAAATTGCCACAAAAGCCGTCCGCAAATGTGGAAC 875
BSNT_03911___ 879 CATACAAATTACAGGTGTGTATGGAGGCAGATATAACGGTTTTCCGTTAG 928
..|.||.||.||.||||||||.||.|||..|||||||...||.||.||||
BPUM_0237___a 876 GGTGCAGATGACGGGTGTGTACGGTGGCCTATATAACATGTTCCCATTAG 925
BSNT_03911___ 929 GAG-ATATTATGCAGCGAAACGTCAATATACGCTCT-------GGACAGG 970
|.| .|.||..||| .||||||||| |.|| |||||||
BPUM_0237___a 926 GCGCCTTTTTCGCA-AGAAACGTCA-------CCCTGAAAATGGGACAGG 967
BSNT_03911___ 971 CTCCTGTGATTCACTATATGCCGTACATGTTTGAACTCGTAT-------- 1012
||||.| |.|.|.|| |||||||...|.||| |||
BPUM_0237___a 968 CTCCGG-------CGAGAGGC--TACATGTCAAAGCTC-TATCAAAAAGT 1007
BSNT_03911___ 1013 --CAACGGGCAAAATTGATCCGGGAGATGTTGTCAGCCATGTCCTGCCGC 1060
||||.|||.||||||||||..|||...|..|||..|||....|||||
BPUM_0237___a 1008 GACAACTGGCGAAATTGATCCTAGAGCGATCATCACACATCAATTGCCG- 1056
BSNT_03911___ 1061 TTAG-TGAAGCCAAGCATGGCTATGACATTTTTGATTCAAAAATGGATGA 1109
|||| |||.|||...||||..|||.||||.|||.||...||.|.||||||
BPUM_0237___a 1057 TTAGATGATGCCGCTCATGCGTATCACATATTTAATGATAAGAAGGATGA 1106
BSNT_03911___ 1110 TTGTATCAAAGTTGTGTTAAAGCCTTAA 1137
||||||.||.||..|.||||||||.|||
BPUM_0237___a 1107 TTGTATAAAGGTCATTTTAAAGCCATAA 1134
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