Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00432 and BPUM_0245
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:18
# Commandline: needle
# -asequence dna-align/BSNT_00432.1.24716.seq
# -bsequence dna-align/BPUM_0245___ycbA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00432-BPUM_0245___ycbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00432-BPUM_0245___ycbA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00432
# 2: BPUM_0245___ycbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1463
# Identity: 880/1463 (60.2%)
# Similarity: 880/1463 (60.2%)
# Gaps: 286/1463 (19.5%)
# Score: 2418.5
#
#
#=======================================
BSNT_00432 1 ATGTTCTGGGTCAAAAGCAATTTGCAGGTTTTCTCCCGATTCCCCAAAAT 50
BPUM_0245___y 0 -------------------------------------------------- 0
BSNT_00432 51 AAAAAGCGAGGATGTGATCAACATAAAACTGGAACGGTTTATTGAAAAAG 100
|..|..|.|||| |.|.||.||.||||||
BPUM_0245___y 1 -----------------TTGAGTTTAAAC-----CAGCTTGTTAAAAAAG 28
BSNT_00432 101 ACGGAT--ATAT--ATTGGCCCTGATGCTGATTACGGTGCCGCTGGCCGG 146
|||.|| |||| ||| ..|.||.||.||||| ||||||||.||.||
BPUM_0245___y 29 ACGCATTCATATTAATT-TTCATGGTGGTGATT---GTGCCGCTTGCAGG 74
BSNT_00432 147 TGAACTGAAATTTTATCCCCTCAATGAAGAATTCCGGGTCAGCTTTGGGG 196
.||||||||.||||||||..|.||||||...||||||.||||||||||.|
BPUM_0245___y 75 AGAACTGAAGTTTTATCCTGTGAATGAAACGTTCCGGATCAGCTTTGGCG 124
BSNT_00432 197 CACCGGTTTTTTTCTTCTTTTTATCATTGTTGCG-GCATGT-GCCCGCTG 244
||||.|..||||||||.|.|||||.|.|.||..| ..||.| |.|||.|.
BPUM_0245___y 125 CACCTGCGTTTTTCTTTTGTTTATTACTCTTAAGAAAATCTAGACCGTTC 174
BSNT_00432 245 TGCTGCCGGGTTTTCTGACTGGAGCGGCTGTTTTCATC------TTTCGC 288
| ||||.||.|||.|.||.||.||.|| |||| |||||.
BPUM_0245___y 175 T--TGCCCGGATTTTTAACAGGCGCAGC------CATCGTGCTTTTTCGA 216
BSNT_00432 289 GT---CTT---TCTGGAATTATGGGGCGGAGGACACAATGGACTG---AC 329
|| ||| |.| ||||..| ||..||| ||| .|
BPUM_0245___y 217 GTAGGCTTAGATTT--AATTCAG----------CATCATG--CTGGTTTC 252
BSNT_00432 330 TCCGATTC--TGTATGATCAAGCGTC-----TGGCTTTTTCTTTT----A 368
.|||..|| |.|||.|.||| .|| |..||||||||.|| |
BPUM_0245___y 253 GCCGCATCATTTTATCAGCAA--TTCCCAAGTTTCTTTTTCTATTTTACA 300
BSNT_00432 369 TATGACTTACGCCTGTCTGTTT----TCCATATTAAAGGCCAATCGTTTC 414
||||..|| ||||| |.||| |||.|| |....|||||
BPUM_0245___y 301 TATGCATT---CCTGT-TCTTTGCCGTCCGTA-------CGGGACGTTT- 338
BSNT_00432 415 CGTGAACGGC---CGATTATGCTCGGTTTCATTGGGTTTATGATTGAAGT 461
|.|||.|| |.|||.|..|.||..|||||||..|.||.||||||.|
BPUM_0245___y 339 --TAAACAGCGCTCTATTTTTATTGGCATCATTGGTCTAATAATTGAATT 386
BSNT_00432 462 TGTGTCAGATTGTGTCGAGCTGGCTGTGCAATTTCTCATTTTTCATACG- 510
..||.|.||||.|||.||||||..|||.||||.|.|..|.|||.|||||
BPUM_0245___y 387 ATTGGCTGATTTTGTTGAGCTGTTTGTACAATATTTAGTATTTGATACGA 436
BSNT_00432 511 -GTTGTCACGCCTGAGAAAA--TCACTGACA--TTGCGGTGATTGCGATT 555
|.|| |||| .|..||| |.|.|||.| ||.| |.||||| |||
BPUM_0245___y 437 CGATG--ACGC--TATCAAAGCTAAGTGATATGTTTC--TCATTGC-ATT 479
BSNT_00432 556 T-CTCACACATTTATTGTGATGAGCTTTTATAGTGTGCTGAAGCTGTATG 604
| ||||||..|||.|.|||||.|||||||.||.|.||.||||||||||||
BPUM_0245___y 480 TGCTCACAGCTTTGTGGTGATCAGCTTTTTTAATATGATGAAGCTGTATG 529
BSNT_00432 605 AAACACAATCGAGAGAAAAACAGACAAGGCAGCAGCACGAGCACATGCTG 654
|..|||||||.|||||.||.||.|..|.|.|.||..|.|||||.|||.||
BPUM_0245___y 530 AGGCACAATCTAGAGAGAAGCAAATCATGAAACAAAATGAGCATATGATG 579
BSNT_00432 655 ATGATCGTTTCCAATTTATATGAAGAAACGGTGCACCTAAAAAAGACATT 704
|||.||.||||.||||||||||||||||||||.||..||||.||.||.||
BPUM_0245___y 580 ATGGTCATTTCTAATTTATATGAAGAAACGGTTCATTTAAAGAAAACGTT 629
BSNT_00432 705 GAAAAC-GACAGAGAAAGTGACAAACGATTCGTATCA-GTTCTATCG--- 749
||||| .||||||.|..|.||..|.||.||.|| || |.|.|||||
BPUM_0245___y 630 -AAAACATACAGAGCATATTACGCAAGAATCATA-CAGGCTGTATCGTCT 677
BSNT_00432 750 -------GGAAATGAAG--GGCAAGGATGT---TCAGCTGAGCGGCAGAA 787
|.|.|.|||| ||.|||||.|| ||| ||||
BPUM_0245___y 678 CCTTTATGAACACGAAGCAGGTAAGGAAGTGAGTCA----------AGAA 717
BSNT_00432 788 -TCCTGAGACTGGCCGGAGAGATTCATGAAGTGAAAAAGGACAACCAGCG 836
|..|||..||.||.|||||.||.||||||||||||||||||||.|||||
BPUM_0245___y 718 CTGTTGAAGCTCGCAGGAGAAATCCATGAAGTGAAAAAGGACAATCAGCG 767
BSNT_00432 837 GATATTCGCAGGGCTTTCAAAACTGATTTCGAATGAGAGTTTGAGAGATT 886
.||.|..||.||||||||.||.||||||||.||.||.|.|.||..|||.|
BPUM_0245___y 768 TATTTATGCTGGGCTTTCTAAGCTGATTTCTAAGGAAAATATGCAAGACT 817
BSNT_00432 887 ATATGAGGGC-----------TTCTGATT-TGCTGCAGCTCGTGATTCGA 924
||||||.||| |||..||| |.|| |.|| ||||
BPUM_0245___y 818 ATATGAAGGCGGAAGAGCTTGTTCAAATTGTCCT-CCGC-----ATTC-- 859
BSNT_00432 925 ATGAATGAAAAGTA--CGCTGAAGCACTAGGGAAGCAGATTGATT--TTT 970
|.|||||||| |||| ..|.||||||||..|.|| .| |||
BPUM_0245___y 860 ----AAGAAAAGTATGCGCT--CTCTCTAGGGAAAAACAT---CTCCTTT 900
BSNT_00432 971 ACTGCTCGATCGAGGGAGAG-----CAT---GACGAATATCACGTATTTA 1012
||..|| |||..| |||| ||| .|.||.||.||.||.||.|
BPUM_0245___y 901 ACATCT-GATATA---AGAGGCATTCATTTGCATGATTACCATGTGTTCA 946
BSNT_00432 1013 TCGTGCTT-TCGATCATTAATAATCTAACAGCAAATGCGGTAGAGGCTAT 1061
| .|.||| |||.|||||||||||.|||..|||||||||||.||.||.||
BPUM_0245___y 947 T-TTTCTTATCGCTCATTAATAATTTAATGGCAAATGCGGTTGAAGCCAT 995
BSNT_00432 1062 GGATGAAGAGGGAATGGTCAGCCTGAGGCTCCGTA-AGCCAAATGAGAGT 1110
.||.|...|.||||||.||...|| |||| .| |||.|| |||
BPUM_0245___y 996 AGAGGGTAACGGAATGATCTCACT-------CGTATTG--AAAGGA-AGT 1035
BSNT_00432 1111 -ATGGTAGAAT-----TCCAGGTGGAAGACAATGGCCCCGGGATTTCCGA 1154
|||.||.||| |.|.|.|.|||||..|||||||.||||||.|.||
BPUM_0245___y 1036 CATGATAAAATAGAGATTCGGATTGAAGATGATGGCCCGGGGATTCCAGA 1085
BSNT_00432 1155 GAAAATCGGAGACATTGTGTTTGACCCGGGCTTTACTTCAAAATATGACG 1204
.|||||..|||||||.||.|||||.||.||||.||||||.||||.|||.|
BPUM_0245___y 1086 AAAAATGAGAGACATAGTATTTGATCCAGGCTATACTTCCAAATTTGATG 1135
BSNT_00432 1205 AATTTGGCACGCCTTCTACGGGTATCGGACTTTCCTACGTAAAGGAAATC 1254
.||.|||.||.||.||.||.||.||.|||.|.|||||.||.||.||..|.
BPUM_0245___y 1136 CATATGGAACACCATCAACTGGGATTGGATTATCCTATGTGAAAGAGCTG 1185
BSNT_00432 1255 GTGACTGAGCTAGAAGGGGATATCACGTTTGATAATC--------AGCAG 1296
||.|..|||||.|..|| |||..|| |.|||| ||.|.
BPUM_0245___y 1186 GTTAAAGAGCTTGGTGG-----TCAAATT--AAAATCGAACAAAGAGAAA 1228
BSNT_00432 1297 C---GGGGAGTGGTGTTT--GC-CATCAGGCTGCCTGTCCGGCATTTGAT 1340
| |||.|..|.| ||| || .||| ||.|||.|.|...||||.||
BPUM_0245___y 1229 CTAAGGGAACAGCT-TTTCAGCTAATC---CTTCCTATACAAAATTTAAT 1274
BSNT_00432 1341 TCAGAAAGGGTGA 1353
.||||.|||||||
BPUM_0245___y 1275 ACAGAGAGGGTGA 1287
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