Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00482 and BPUM_0247

See Amino acid alignment / Visit BSNT_00482 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:18
# Commandline: needle
#    -asequence dna-align/BSNT_00482___yccF.1.24716.seq
#    -bsequence dna-align/BPUM_0247___yccF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00482___yccF-BPUM_0247___yccF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00482___yccF-BPUM_0247___yccF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00482___yccF
# 2: BPUM_0247___yccF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity:     704/1232 (57.1%)
# Similarity:   704/1232 (57.1%)
# Gaps:         301/1232 (24.4%)
# Score: 1759.0
# 
#
#=======================================

BSNT_00482___      1 GTGGGAAAAGTGAAACGAAATGCCCCTTGCCCATGCGGCAGCGGCAAGAA     50
                     .||||||||.|.|||||||||||.|..|||||||||||.|||||.||.||
BPUM_0247___y      1 TTGGGAAAAATTAAACGAAATGCGCTCTGCCCATGCGGAAGCGGAAAAAA     50

BSNT_00482___     51 ATATAAAAAATGCTGCGGAAGT--AAAGTTGTCGACTTCCCGGCG--GAA     96
                     |||||||.|.|||||.|   ||  |||||          |.||||  |||
BPUM_0247___y     51 ATATAAACATTGCTGTG---GTCAAAAGT----------CAGGCGGAGAA     87

BSNT_00482___     97 CTAGCGGC------------AAAAGAAGCGAAACAAATTCAGGAAGACTT    134
                     |.|.||.|            .||.|||||...||||.||||..|.||.||
BPUM_0247___y     88 CAAACGTCTGAGCTTGTGTTTAAGGAAGCTGTACAAGTTCAAAAGGATTT    137

BSNT_00482___    135 AGTGGAGTATGCCTTCACAGTACAT-AGAGA------AAGCATTTCAGGC    177
                     |.||.|.|||||.|||.|...|||| |||||      ||.||.||||   
BPUM_0247___y    138 AATGAATTATGCATTCTCTAAACATCAGAGAGCCATCAATCAATTCA---    184

BSNT_00482___    178 TTTATCAACCAGCATGA------TTTTCTTTCTGCTATGGACAGACAGAC    221
                      |||         ||||      |||||||.|.|.||||||.|.|.|.||
BPUM_0247___y    185 -TTA---------ATGAGTTTTCTTTTCTTGCAGATATGGATAAAGAAAC    224

BSNT_00482___    222 GAAAGACATCAGCGTATTTAACTTAGGAATCTGGGGAATCTTCTTCCACC    271
                     |.||.|.|||...||.|||.|.||..|..|.|||||.|||||.||||..|
BPUM_0247___y    225 GCAACAAATCTCGGTCTTTCATTTGAGTGTATGGGGCATCTTTTTCCGTC    274

BSNT_00482___    272 CGCTTGCTG----GTGAGAAGACAATCTTCGAAGAGTACCTTCAGAAAAA    317
                     |..|..|.|    |..|||| ||.||||||.||||.|.|| |.|.|||.|
BPUM_0247___y    275 CATTAACAGACCAGAAAGAA-ACCATCTTCCAAGAATTCC-TGACAAAGA    322

BSNT_00482___    318 AGGC----GATTCGATCACTCGTCCGAAAACGCGTGAGA-----TCGTAG    358
                     |.||    |||   ||.||.|||||||||||     |.|     |.||..
BPUM_0247___y    323 AAGCGGAAGAT---ATTACCCGTCCGAAAAC-----AAAACAAGTGGTTC    364

BSNT_00482___    359 AATCATGG-CAGAGCATGACGCC-----TGC-TTTATTGCTGCTGAAGGA    401
                     |||||||| |||| ||||...||     ||| ||||||           |
BPUM_0247___y    365 AATCATGGACAGA-CATGGAACCATCTTTGCTTTTATT-----------A    402

BSNT_00482___    402 CCTGAA-----GGA--AGGCATCATTCACTTTGAAGATGTGATTACGGCA    444
                     ..||||     |||  ||.| || ||.|||||||..||.||.|.||.||.
BPUM_0247___y    403 AATGAAAAAACGGACGAGTC-TC-TTTACTTTGAGAATATGGTGACAGCT    450

BSNT_00482___    445 AAACAATTCGAAGTGG-----AAATGGACGCCAGCAATCAAGAC----CT    485
                     .||.|..|.|||||.|     |||      ||.|  ||||| ||    ||
BPUM_0247___y    451 GAAAAGGTTGAAGTAGATGTAAAA------CCGG--ATCAA-ACAGTGCT    491

BSNT_00482___    486 TCCTCCAGTGGGAAGCCTGATTCTTGGATACCCAATCCA---CGAAGCGG    532
                     .|||..|..||||||.||..|.|||||||.|||..|.||   .|||   |
BPUM_0247___y    492 ACCTGAAAAGGGAAGTCTCGTGCTTGGATTCCCTGTTCAATTTGAA---G    538

BSNT_00482___    533 AAAAAGCAGAATTCTTCATGCAGTTCACGATCTTCCCGGTGAAGAG--AA    580
                     ||||||||||.||.|||||.||.|..||.||.||..||  .|||||  .|
BPUM_0247___y    539 AAAAAGCAGAGTTTTTCATTCAATATACAATGTTTGCG--AAAGAGTTTA    586

BSNT_00482___    581 CAGAAGCGCT--------------GATCAGCAAGGTGAAGAAATATGCGG    616
                     ||||..||||              | |||||..|.||||| .|||||.||
BPUM_0247___y    587 CAGATACGCTTCTTCTTCAAGTTCG-TCAGCTTGTTGAAG-CATATGAGG    634

BSNT_00482___    617 ---ATGCCGCTGTGAAGGACGGCAAAACGCCGGAGGAC-TTCATGAAGCA    662
                        |||       ||.|.|||         ||.||.|| ||.||||  .|
BPUM_0247___y    635 CAAATG-------GAGGAACG---------CGCAGCACATTTATGA--GA    666

BSNT_00482___    663 GGA--ATTCAACAACGTTCTGTTCGCGT---TGTTAGCTGAGAAAGATGA    707
                     |.|  ||||....|||   ||||.|.||   ||||.||..||.||||.|.
BPUM_0247___y    667 GAATCATTCCCTGACG---TGTTGGAGTGCATGTTTGCAAAGCAAGAAGT    713

BSNT_00482___    708 AGAGCCAAAAGCAGAGA---------AAGCGGAAG------------TAA    736
                     |||   |.||.|.||.|         ||.|.||||            |||
BPUM_0247___y    714 AGA---AGAATCGGAAACATTTGCTCAAACAGAAGGCGATACAGGTTTAA    760

BSNT_00482___    737 ---------GCACTGTTGAGTGGGCAA---ACG----ACTTGGAGAAAGA    770
                              |||   |.||.|||||||   |||    |||       .||
BPUM_0247___y    761 CAGCAGATCGCA---TGGACTGGGCAAGTGACGTTCAACT-------GGA    800

BSNT_00482___    771 AACCGCT--GCGGCTATTGAAGAAGGCATGA------GCGGGGA--AGAG    810
                     |||.|||  ||.|  ||||||||.||.||||      .||||||  |.||
BPUM_0247___y    801 AACTGCTAAGCTG--ATTGAAGATGGAATGAAAGAACACGGGGACCAAAG    848

BSNT_00482___    811 TATCC-GACTGAATTGATCCCAGC-TGTT-ATTGCCATCTGGAAAACATT    857
                        || ||||||  ||      || .||| |.||   |.||||||.|.|.
BPUM_0247___y    849 ---CCTGACTGA--TG------GCGCGTTAACTG---TGTGGAAAGCCTA    884

BSNT_00482___    858 CTGCGAGAAAAAATCACCTGTCATCAG-AAAGCCGGAAGCTTTTGCGGCG    906
                     .||.||..|.|||||||||||.|||.| |||| |.|.|.|.|||||.|||
BPUM_0247___y    885 TTGTGATCAGAAATCACCTGTGATCCGTAAAG-CAGCATCATTTGCTGCG    933

BSNT_00482___    907 GCAGTTGAATATTATGTAAACGCGATTTCTCTT---AACGGCGCGTCCG-    952
                     |.|.|.||||||||..|..|      |||.|||   |.||..|| .||| 
BPUM_0247___y    934 GGAATCGAATATTACATTCA------TTCACTTGCAAGCGATGC-CCCGC    976

BSNT_00482___    953 TTTCCCAGGCTAAACTGGCGAAAAAATACGGCGTCAGTGCATCAACGATT   1002
                     ||||.||.||..||.|.||||||||.||.|||.|.|||||.||.||..|.
BPUM_0247___y    977 TTTCTCAAGCGCAAATAGCGAAAAAGTATGGCATTAGTGCGTCTACTGTA   1026

BSNT_00482___   1003 TCCAGCCGTTACAAAGAAATTGAAAGCACGCTGCAAGATGAAGCAGATCG   1052
                     ||.|||||||..|||||.||.||||...||.||.||||.||         
BPUM_0247___y   1027 TCGAGCCGTTTTAAAGATATCGAAAAAGCGGTGAAAGAAGA---------   1067

BSNT_00482___   1053 TTTTGCACAAG------CGTTATCCTCATAA-   1077
                           |||||      ||.|||       | 
BPUM_0247___y   1068 ------ACAAGAGGCGACGGTAT-------AG   1086


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