Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00491 and BPUM_0249

See Amino acid alignment / Visit BSNT_00491 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:19
# Commandline: needle
#    -asequence dna-align/BSNT_00491___yccK.1.24716.seq
#    -bsequence dna-align/BPUM_0249___yccK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00491___yccK-BPUM_0249___yccK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00491___yccK-BPUM_0249___yccK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00491___yccK
# 2: BPUM_0249___yccK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 976
# Identity:     635/976 (65.1%)
# Similarity:   635/976 (65.1%)
# Gaps:         128/976 (13.1%)
# Score: 1986.0
# 
#
#=======================================

BSNT_00491___      1 ATGGATCAAACACGTACACTCGGCAAAACGAAGCTGAAGGTGAAGCGGAT     50
                                                            |||||.|.|||
BPUM_0249___y      1 ---------------------------------------GTGAATCCGAT     11

BSNT_00491___     51 CGGATTCGGCGCGAATGCGGTCGGCGGGCATAATCTATTTCCAAATCTAC    100
                     .||..|.||..||||||||||.||.||.||||||.|.||.||.||.||..
BPUM_0249___y     12 AGGGCTTGGTACGAATGCGGTGGGTGGACATAATTTGTTCCCGAACCTGA     61

BSNT_00491___    101 ATGATGAAACAGG--GAAGGATTTAGTGCGCACGGCATTGGATGGCGGCG    148
                     .|||.||..|.||  ||  ||..|.|||...||.||..|.|||...||.|
BPUM_0249___y     62 GTGAAGATGCCGGACGA--GAGCTTGTGGAGACAGCTCTTGATCAAGGTG    109

BSNT_00491___    149 TCAATTTTATCGATACCGCTTTTATATATGGATTGGGGCGATCTGAAGAA    198
                     |||||||..|.|||.|.||||||||.|||||..||||.||.||.||.|||
BPUM_0249___y    110 TCAATTTCTTAGATTCTGCTTTTATTTATGGGCTGGGCCGTTCAGAGGAA    159

BSNT_00491___    199 TTAATCGGCGAAGTCGTA----CAGGAACGCGGCG--TGCGGAATGAGCT    242
                     ||.||.||.||..|  ||    ||  ||.|.||||  .|.|.||  |.||
BPUM_0249___y    160 TTGATTGGTGAGAT--TATTGCCA--AAAGAGGCGGTAGAGAAA--ACCT    203

BSNT_00491___    243 CATCATCGCCACCAAAGGAGCTCATAAAGAAGTGAACGG-CAGCATTGAA    291
                     ..||.|.||.||.|||||.||||||||||||||.||||| || .||||||
BPUM_0249___y    204 TGTCCTTGCGACAAAAGGGGCTCATAAAGAAGTAAACGGACA-AATTGAA    252

BSNT_00491___    292 TTAGACAATAGCCGGGAGTTTCTTCGCAGCG-AGGTCGAGAAGAGCCTAA    340
                     ||.||.||.|||||.||.||| ||...||.| |||||||.||.|||||.|
BPUM_0249___y    253 TTGGATAACAGCCGAGACTTT-TTAAGAGAGCAGGTCGAAAATAGCCTGA    301

BSNT_00491___    341 AGCGGCTGAAAACAGATTACATTGATTTGTATTATGTTCACTTTCCGGA-    389
                     |.||.||||||||||||||.||||||||.||.|||.|.||.||.||||| 
BPUM_0249___y    302 AACGACTGAAAACAGATTATATTGATTTATACTATATGCATTTCCCGGAC    351

BSNT_00491___    390 -------------TGGAAAAACANTCGCTGAAGTGGCGGGCACTTTGAAA    426
                                  |||||           |||||.||.|||||.||.||.
BPUM_0249___y    352 GGCCGGACGCCGCTGGAA-----------GAAGTAGCAGGCACATTAAAG    390

BSNT_00491___    427 GAGCTGAAGGATGAGGGGAAAATCAAAGCGATCGGCGCTTCGAACCTCGA    476
                     ||..||||||||||.||||||||||..|||||.||.||.||.|||||.||
BPUM_0249___y    391 GAATTGAAGGATGAAGGGAAAATCAGGGCGATTGGTGCATCTAACCTTGA    440

BSNT_00491___    477 TTATCAGCAATTGCAGGAATTTAATGCTGATGGCTATTTGGAGGT-CTTC    525
                     ||.|.|.||..|.||.|..||||||...||||||||.||.||.|| ||| 
BPUM_0249___y    441 TTTTGAACAGCTTCAAGCCTTTAATCGAGATGGCTACTTAGATGTGCTT-    489

BSNT_00491___    526 CAGGCCGAATATTCTCTCATACAGCGTGATGCCGAGAAAGAGCTTCTTCC    575
                     |||.|.||.||||||.|..|..|.|||||.||.||.||.||.|||||.||
BPUM_0249___y    490 CAGTCGGAGTATTCTTTGCTGAAACGTGAGGCAGAAAAGGATCTTCTCCC    539

BSNT_00491___    576 ATACTGTGAAAAACAAGGCATCTCCTTTATTCCTTACTTTCCGCTTGCGT    625
                     ||||||.|...|.||..|.||.||||||||||||||.||.|||.|.||||
BPUM_0249___y    540 ATACTGCGTCGAGCATCGTATTTCCTTTATTCCTTATTTCCCGTTGGCGT    589

BSNT_00491___    626 CCGGACTGCTGACAGGAAAATTCACGCAAGA---CACAGTCTTTGATGAT    672
                     |.||..||.||||.||.|||||.|||.|.||   .|||   |||||||||
BPUM_0249___y    590 CAGGTTTGTTGACTGGTAAATTTACGAAGGATGCGACA---TTTGATGAT    636

BSNT_00491___    673 -TTC-AG-AAAGGATAAACCTCAATTTCAGGGTGAAACGTTTATCCACAA    719
                      ||| || |||.|||   ||.|..||.||.||.||..||||..|.||.||
BPUM_0249___y    637 ATTCGAGCAAAAGAT---CCGCTTTTCCAAGGCGAGGCGTTCCTTCAAAA    683

BSNT_00491___    720 TCTCAAAAAAGTAGATAAGCTGAAAGCAGTAGCGGA--GGAAAAACAAGC    767
                     ||||.||||||||||.|||||.||.|||.|.||..|  ..||||||  ||
BPUM_0249___y    684 TCTCGAAAAAGTAGACAAGCTAAAGGCAATTGCACAATCTAAAAAC--GC    731

BSNT_00491___    768 GGATACGGCACATGTCGCCTTGGCGTGGCTGTTA--ACGAGACCGGCGAT    815
                     .||.||||||||.|||||..|.||.|||||.|||  || ||..|||| ||
BPUM_0249___y    732 CGAAACGGCACACGTCGCACTCGCTTGGCTTTTAGCAC-AGGACGGC-AT    779

BSNT_00491___    816 TGATGCCATTATTCCAGGAGCTAAACGACCTGAGCAATTACAGGATAATC    865
                     ||||||||||||||||||.||.||||||.||||||||.|.|||.|.||.|
BPUM_0249___y    780 TGATGCCATTATTCCAGGTGCAAAACGAGCTGAGCAAGTTCAGCAAAACC    829

BSNT_00491___    866 TGAAAACCTTGAAC---ATTGAACTCACCGAAGACGAAGTGAAT----TT    908
                     |.|||||   .|||   .||.||.|.||..||||.|||.|.|||    ||
BPUM_0249___y    830 TCAAAAC---AAACGAAGTTCAATTAACAAAAGAGGAAATCAATCAAATT    876

BSNT_00491___    909 CATCAGCGACATTT----TTAAATAA    930
                     .|    |.||||||    ||.|    
BPUM_0249___y    877 GA----CCACATTTTCTCTTGA----    894


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