Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00488 and BPUM_0252
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:19
# Commandline: needle
# -asequence dna-align/BSNT_00488.1.24716.seq
# -bsequence dna-align/BPUM_0252___natA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00488-BPUM_0252___natA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00488-BPUM_0252___natA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00488
# 2: BPUM_0252___natA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 749
# Identity: 261/749 (34.8%)
# Similarity: 261/749 (34.8%)
# Gaps: 418/749 (55.8%)
# Score: 903.0
#
#
#=======================================
BSNT_00488 0 -------------------------------------------------- 0
BPUM_0252___n 1 ATGATTACTCTCAGCGATTGCAGTTGCTGGTTTAAAGATAAGAAAAAGGT 50
BSNT_00488 0 -------------------------------------------------- 0
BPUM_0252___n 51 CGTAAAAGCGATGAAGCATATGACATTCTCCGTGAAGGAAGGGGAAGTCG 100
BSNT_00488 0 -------------------------------------------------- 0
BPUM_0252___n 101 TTGGCATCCTAGGAGAAAATGGAGCAGGGAAAACCACCTTATTACGCGCC 150
BSNT_00488 0 -------------------------------------------------- 0
BPUM_0252___n 151 GTTGCCACATTATTAGAACCTACGCACGGATCAGTGACTGTCGCAGGCTT 200
BSNT_00488 0 -------------------------------------------------- 0
BPUM_0252___n 201 TGATACGGTGAAAGAGTCAACAGAAGTGAAAAAGCGAATTGGTGTCTTGT 250
BSNT_00488 0 -------------------------------------------------- 0
BPUM_0252___n 251 TTGGCGGTGAGACGGGGCTTTACGATCGTTTGACGGCACGAGAAAACCTT 300
BSNT_00488 0 -------------------------------------------------- 0
BPUM_0252___n 301 GAATACTTTGGCAAATTGTATGGCTTAGATCAGCATGAAATCAAAGCAAG 350
BSNT_00488 0 -------------------------------------------------- 0
BPUM_0252___n 351 AATAGAGGATTTGGCAAAGCGTTTTGGGATGAGACAATACATGGATCGCA 400
BSNT_00488 1 --GTGGGCGGGTTTTCGAAAGGCATGAGGCAGAAAGTCGCCATTGCCAGA 48
|||...||.||.||.|.|||.||||..||.|||||.||.|||||||||
BPUM_0252___n 401 AGGTGAAAGGATTCTCAAGAGGAATGAAACAAAAAGTGGCGATTGCCAGA 450
BSNT_00488 49 GCGCTGATTCACGATCCGGACATCATTTTATTTGATGAGCCGACAACTGG 98
.|..|.|||||.|||||.|||||.||||||||||||||||||||||| .|
BPUM_0252___n 451 ACCTTAATTCATGATCCTGACATTATTTTATTTGATGAGCCGACAAC-AG 499
BSNT_00488 99 GCTT-GATATTACGTCAAGCAACATTTTCCGAGAATTTATACAGCAGCTG 147
|||| |||||.||.|||||.||.||||||.||||.|||||.||.||.||.
BPUM_0252___n 500 GCTTGGATATCACATCAAGTAATATTTTCAGAGACTTTATTCATCAACTC 549
BSNT_00488 148 AAA-AGAGAACAAAAAACGATTCTTTTCTCCAGCCACATTATGGAGGAAG 196
||| || .||.|.|||||.||.|||||.||.||.|||||.|||||.||||
BPUM_0252___n 550 AAACAG-CAAAATAAAACCATCCTTTTTTCAAGTCACATCATGGAAGAAG 598
BSNT_00488 197 TGCAGGC-ACTCTGTGACAGTGTCATCATGATTCA-CAGCGGAGAGGTGA 244
| |||.| |||.|||||||||||.||.|||||||| || .||||||.|..
BPUM_0252___n 599 T-CAGCCAACTTTGTGACAGTGTGATGATGATTCATCA-AGGAGAGCTTG 646
BSNT_00488 245 TTTACCGAGGGGCGCTT---GAATCACTATAC-GAGAGCGAGCGCAGTGA 290
|.||...||||.|.||| ||||.| ||||| .|| ||.|..|||||
BPUM_0252___n 647 TATATAAAGGGACACTTCCAGAATTA-TATACTCAG---GAACAAAGTGA 692
BSNT_00488 291 GGATTTGAATTACATCTTTATGTCTAAGCTTGTCAGGGGGATTTCTTAA 339
.||.|||||.||.|||||||||||.|||||.|..||||||.||||.|||
BPUM_0252___n 693 TGACTTGAACTATATCTTTATGTCGAAGCTCGCTAGGGGGGTTTCATAA 741
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