Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00511 and BPUM_0259
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:20
# Commandline: needle
# -asequence dna-align/BSNT_00511.1.24716.seq
# -bsequence dna-align/BPUM_0259.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00511-BPUM_0259.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00511-BPUM_0259.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00511
# 2: BPUM_0259
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1064
# Identity: 273/1064 (25.7%)
# Similarity: 273/1064 (25.7%)
# Gaps: 691/1064 (64.9%)
# Score: 793.5
#
#
#=======================================
BSNT_00511 1 TTGCCTATTCTTGTGTCACCATCTAAAAACAGACAGAAAGGAAGCGGCCT 50
BPUM_0259 0 -------------------------------------------------- 0
BSNT_00511 51 TTTGAT----TCATTTAAGCATACTTGATC-AGGCACCTGTTTCTAAAGG 95
|| |||.||.| ||||.|.|||| ||.|.|| .||.|||||||
BPUM_0259 1 ----ATGCCATCACTTCA-CATATTAGATCAAGTCGCC-ATTCCTAAAGG 44
BSNT_00511 96 --AGAAAGC-CCAGTGTCA---ACTCTC-CA--GCATTCGGTTGAGCTTG 136
|||.||| |.||.|.|| |.||.| || |||...||.|.||||||
BPUM_0259 45 TCAGACAGCACAAGAGACATTGATTCACACAACGCAGCTGGCTCAGCTTG 94
BSNT_00511 137 CCCAATTTAGCGAAGA-----GTGGGGCTATAAGCGTTATTGGTTTGCCG 181
| ||| .|||| |||.||||||||||||||||.|
BPUM_0259 95 C------------AGAAACCCTTGGG--TATGAGCGTTATTGGTTTGCTG 130
BSNT_00511 182 AGCATCACAGCACGAAAGGACTGGCAAGCACAGCGCCTGAAATCATGATC 231
|.||.||||||||.|.|||.||.||.||.|||||.||||||||..|.||.
BPUM_0259 131 AACACCACAGCACAAGAGGGCTCGCTAGTACAGCACCTGAAATATTAATG 180
BSNT_00511 232 GCCCGCATCGCAGCACAGACAAACACCATTCGTGTCGGATCAGGCGGCGT 281
||.|..||.||.||.||.|||...|||.|.|||..|||.||.||||||.|
BPUM_0259 181 GCACATATTGCCGCTCATACATCGACCTTACGTACCGGTTCTGGCGGCAT 230
BSNT_00511 282 GCTTCTGCCCCAATACAGCCCATTTAAAGTGGCTGAAACCTTTCGCCAGC 331
..|.||.||.||.||||||||.||||||||.||.||...|...||.||||
BPUM_0259 231 TTTACTTCCGCAGTACAGCCCCTTTAAAGTAGCAGAGGTCACGCGGCAGC 280
BSNT_00511 332 TTGAGGCTCTGTATCCAAACCGGATTGACCTCGGCGTCGGCCGTTCCCCC 381
||||.||||||||||||...||.|||||..||||.|||||....||.||.
BPUM_0259 281 TTGAAGCTCTGTATCCAGGACGAATTGAAATCGGTGTCGGTAAATCTCCG 330
BSNT_00511 382 GGCGGCA-CGACAAAAACCAGGCTTGCATTAACGGACGGGGTG-AAAAAG 429
|||||.| .|| ||..||.||.||.||.||.||.|||||.||| |.||||
BPUM_0259 331 GGCGGAATTGA-AAGGACGAGACTGGCTTTGACAGACGGCGTGCATAAAG 379
BSNT_00511 430 -CTTAACCGAATTTAA---------------------------------- 444
|.||.|..|.|||.|
BPUM_0259 380 ACCTATCTCAGTTTGACCGCCAGCTGAAGGATCTCCTCTTTTACTTATCA 429
BSNT_00511 444 -------------------------------------------------- 444
BPUM_0259 430 GACAGCCTGCCTTCTGGACACCCGCATGCAGGAGTCAAAGCTTCTCCGCT 479
BSNT_00511 444 -------------------------------------------------- 444
BPUM_0259 480 TGTTGATGCTCATCCGCCGGTTTGGCTGCTTGGTTTAGGAGAAAATAGCG 529
BSNT_00511 444 -------------------------------------------------- 444
BPUM_0259 530 CCATGCAAGCAGCAGAGCTTGGAATCAACTATATTTTTGGTCACTTTATC 579
BSNT_00511 444 -------------------------------------------------- 444
BPUM_0259 580 CACCCTGCACGCGGTAAACAAGCATTCGAGACGTATCGATCTCACTTTTC 629
BSNT_00511 444 -------------------------------------------------- 444
BPUM_0259 630 TCCATCTGTCTTTTCCACTCAGTCGCACGCTATGTTTGCCGTGTTTGTCA 679
BSNT_00511 444 -------------------------------------------------- 444
BPUM_0259 680 TTTGTGGTGAAACTGATGAAGAGGCCGAACGGATCGCCAGTAGTACAGAT 729
BSNT_00511 444 -------------------------------------------------- 444
BPUM_0259 730 TTATGGCTGCTGCGTGTTGAAAAAGGACTGGACAGCCGCGTCCCCTCTAT 779
BSNT_00511 444 -------------------------------------------------- 444
BPUM_0259 780 AGAAGAGGCTAGTACCTATCACTACACCTCGCAGGAAAAGAAAAAAGTGT 829
BSNT_00511 444 -------------------------------------------------- 444
BPUM_0259 830 TACAAAACCGCCAGCGGATGATCGTCGGCTCAAAGGCAACGGTAAAAGAG 879
BSNT_00511 444 -------------------------------------------------- 444
BPUM_0259 880 CAATTACTTCGCTTGATGGACCGTTATCAAACGGATGACATCATGATTCT 929
BSNT_00511 444 -------------------------------------------------- 444
BPUM_0259 930 CAACAATTCATTTGATCCGATAGAAAAACAGCGTTCCTTCAAACGAATCG 979
BSNT_00511 444 -------------- 444
BPUM_0259 980 CAGAACTATTTTGA 993
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