Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00512 and BPUM_0260

See Amino acid alignment / Visit BSNT_00512 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:20
# Commandline: needle
#    -asequence dna-align/BSNT_00512___yceC.1.24716.seq
#    -bsequence dna-align/BPUM_0260___yceC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00512___yceC-BPUM_0260___yceC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00512___yceC-BPUM_0260___yceC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00512___yceC
# 2: BPUM_0260___yceC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 625
# Identity:     435/625 (69.6%)
# Similarity:   435/625 (69.6%)
# Gaps:          47/625 ( 7.5%)
# Score: 1427.5
# 
#
#=======================================

BSNT_00512___      1 GTGGCAATTTCTTTAGAAAAAGGTCAACGAATTGATTTAACAAAAGGAAA     50
                     .||||.|||.|.|||||||||||||||||.|||||||||||||||||.||
BPUM_0260___y      1 TTGGCGATTACATTAGAAAAAGGTCAACGTATTGATTTAACAAAAGGCAA     50

BSNT_00512___     51 AGCCGGTCTGTC-AAAATTGATGGTCGGTCTCGGCTGGGACCCAGTGTCC     99
                     |||.||.||..| ||.||| .|.||.||.||.||||||||||||||.||.
BPUM_0260___y     51 AGCAGGGCTAACGAATATT-CTTGTTGGACTTGGCTGGGACCCAGTTTCA     99

BSNT_00512___    100 TCAGGCGGAGGATTCTTCAGCAAACTGCT---TGGCGGAGGCGGTCCGAA    146
                     ..||||||.|||||.||..|.||.|||.|   ||||||||||||..|..|
BPUM_0260___y    100 CAAGGCGGCGGATTTTTAGGTAAGCTGTTTGGTGGCGGAGGCGGCGCTGA    149

BSNT_00512___    147 TATCGACTGTGATGCTTCAGTGCTGATGCTGGAAAACGGAAAATTCACCG    196
                     |||.||.|||||.|||||||||||.||||||.||||.|..||.||....|
BPUM_0260___y    150 TATTGATTGTGACGCTTCAGTGCTCATGCTGAAAAATGATAAGTTTGTTG    199

BSNT_00512___    197 AAAAGAAAAATCTGATTTATTTCGGCAACCTGAAAAGCCGCTGCGGCGGT    246
                     ||||.|||.||.|||||||.||.||.|||.||||||||...||||||.||
BPUM_0260___y    200 AAAATAAAGATTTGATTTACTTTGGTAACTTGAAAAGCAAGTGCGGCAGT    249

BSNT_00512___    247 GTACAGCATACAGGCGACAACCTGACGGGTGACGGTGCGGGCGATGACGA    296
                     ||..||||||||||.|||||||||||.|||||.||.|..||.|||||.||
BPUM_0260___y    250 GTTGAGCATACAGGTGACAACCTGACAGGTGAAGGAGACGGAGATGATGA    299

BSNT_00512___    297 GCAAATTATGATAGATTTAGATAAAGTGCCTGGAAACATCGATAAGCTTG    346
                     .|||.|..|..|..|.|||...||.|||||.||.||..|..||||..|.|
BPUM_0260___y    300 ACAAGTCCTCGTCAACTTAAGCAAGGTGCCAGGCAATGTGAATAAATTGG    349

BSNT_00512___    347 TATTTGTAGTGAACATTTACGATTGTGTCAGAAGAAAACAAGATTTCGGC    396
                     |.||||||||||||||.||.|||....|.||||||||.|||.||||.||.
BPUM_0260___y    350 TGTTTGTAGTGAACATCTATGATGCACTTAGAAGAAATCAACATTTTGGT    399

BSNT_00512___    397 ATGATTCAAAATGCGTTTATCCGCGTAGTTGA----TCAATCTAATCACG    442
                     ||||||||||||||||..||.|||.|.||.||    ||||.| ||||   
BPUM_0260___y    400 ATGATTCAAAATGCGTACATTCGCATTGTCGATCGTTCAAAC-AATC---    445

BSNT_00512___    443 AGGAAATGCTCAAGTACAATTTGAGAGACAATTACGCCGGCAGAACAAGC    492
                     |.|||.|..|.||.||.|||||.|.|||..|.||.||.||.|.||||   
BPUM_0260___y    446 AAGAACTAGTGAAATATAATTTAAAAGATGAATATGCAGGGAAAACA---    492

BSNT_00512___    493 CTGATTACA-----GCAGAAATCTACCGCAGCGGCAGTGAGTGGAAGTTT    537
                      |.|||| |     |.|||..|.||.|||..||..|.|||.|||||||||
BPUM_0260___y    493 -TCATTA-ATCGTTGGAGAGCTTTATCGCCACGAAAATGAATGGAAGTTT    540

BSNT_00512___    538 GCAGCGATTGGTGAAGG-CATG-----AACGATACG-AGATTAGAAGATA    580
                     |      |||.||.||| .|||     ||||||.|| ||.|| |..||||
BPUM_0260___y    541 G------TTGCTGTAGGAAATGGTACAAACGATGCGAAGCTT-GCCGATA    583

BSNT_00512___    581 TTATCAGCCGA-----TACGTATAA    600
                     |||     |||     |||.|.|||
BPUM_0260___y    584 TTA-----CGAGAAACTACATTTAA    603


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