Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00515 and BPUM_0262

See Amino acid alignment / Visit BSNT_00515 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:20
# Commandline: needle
#    -asequence dna-align/BSNT_00515___yceE.1.24716.seq
#    -bsequence dna-align/BPUM_0262___yceE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00515___yceE-BPUM_0262___yceE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00515___yceE-BPUM_0262___yceE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00515___yceE
# 2: BPUM_0262___yceE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 601
# Identity:     445/601 (74.0%)
# Similarity:   445/601 (74.0%)
# Gaps:          44/601 ( 7.3%)
# Score: 1669.5
# 
#
#=======================================

BSNT_00515___      1 ATGGCCATTCAATTATCAAAAGGACAGCGCATTGATTTAACAAAAACAAA     50
                     |||||.|||||..|||||||||||||.||..|.||||||||||||||.||
BPUM_0262___y      1 ATGGCGATTCAGCTATCAAAAGGACAACGTGTCGATTTAACAAAAACCAA     50

BSNT_00515___     51 TCCGGGACTGACAAAAGCGGTGATCGG-CTTAGGCTGGGATACAAACAAG     99
                     .||.||||||||.||||.|.||||||| ||| ||.||||||||.||.||.
BPUM_0262___y     51 CCCAGGACTGACGAAAGTGATGATCGGTCTT-GGGTGGGATACGAATAAA     99

BSNT_00515___    100 TACTCCGGCGGACACGATTTTGACCTGGATGCTTCGGCCTTTTTAGTTGA    149
                     ||.||.||.|||..|||.|||||..||||.|||||.||.||.|||||.||
BPUM_0262___y    100 TATTCAGGTGGAGCCGAATTTGATTTGGACGCTTCAGCATTCTTAGTGGA    149

BSNT_00515___    150 TGCGCATGATAACTGCGTAAATGATC----TC-----------GATTTCG    184
                     |||               |||..|||    ||           ||.||.|
BPUM_0262___y    150 TGC---------------AAACAATCGTTGTCAGCAAGACACAGACTTTG    184

BSNT_00515___    185 TCTTCTATAATAACCTTGAACATCCGAGCGGCGGTGTCATCCATACGGGT    234
                     |.|||||||||||||||.|.|||||.||||||.||||.|..|||||.|||
BPUM_0262___y    185 TTTTCTATAATAACCTTCAGCATCCAAGCGGCAGTGTGACTCATACAGGT    234

BSNT_00515___    235 GACAACCGCACGGGTGAGGGCGACGGAGATGATGAGCAGATTATCGTTGA    284
                     ||.|||||.||||||||.||.||.||||||||.|||||.|||.|||||||
BPUM_0262___y    235 GATAACCGGACGGGTGAAGGAGATGGAGATGACGAGCAAATTCTCGTTGA    284

BSNT_00515___    285 TTTCTCAAAAATCCCTGCTCACATTGAGAAAATCGGCATCACAGTGACCA    334
                     ||||||||||||.||||||.|||||||....|||||.||.|||||.||.|
BPUM_0262___y    285 TTTCTCAAAAATTCCTGCTAACATTGATCGTATCGGAATTACAGTAACGA    334

BSNT_00515___    335 TTCACGACGCTGAAGCACGCAGCCAAAACTTTGGACAAGTTTCCAATGCA    384
                     ||||.||.||.||.||.||||||||.||.|||||||||||.||.|||||.
BPUM_0262___y    335 TTCATGATGCAGAGGCGCGCAGCCAGAATTTTGGACAAGTCTCAAATGCG    384

BSNT_00515___    385 TTTGTCCGCGTTGTGGATGAAGAAACGC-----AGAA-TGAGCTTCTTCG    428
                     |||||.||.|||||...||||| |..||     |||| |||     ||||
BPUM_0262___y    385 TTTGTTCGTGTTGTAAGTGAAG-AGGGCGGGGAAGAATTGA-----TTCG    428

BSNT_00515___    429 CTTCGATTTGGGAGAAGACTTCTCCATTGAAACAGCTGTTGTCGTTTGTG    478
                     |||.|||||.||.|||||||||||.||.||||||||||||||.||.||||
BPUM_0262___y    429 CTTTGATTTAGGGGAAGACTTCTCAATCGAAACAGCTGTTGTGGTATGTG    478

BSNT_00515___    479 AGCTTTACAGACACGGCGGCGAGTGGAAATTCAATGCGATCGGCAGCGGA    528
                     |.||.|||.|.|||||..||||.|||||.||.||.||||||||.||||||
BPUM_0262___y    479 AACTATACCGCCACGGAAGCGATTGGAAGTTTAACGCGATCGGAAGCGGA    528

BSNT_00515___    529 TTTTCCGGCGGGCTGGCTGCATTGTGCCGGAATTACGGTTTGCAAGTGTA    578
                     ||.||.|||||.||.||.||..|.||.|..|||||.||.||..||||.||
BPUM_0262___y    529 TTCTCTGGCGGACTTGCAGCTCTTTGTCAAAATTATGGGTTAGAAGTATA    578

BSNT_00515___    579 A    579
                     |
BPUM_0262___y    579 A    579


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