Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00518 and BPUM_0268
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:20
# Commandline: needle
# -asequence dna-align/BSNT_00518___yceG.1.24716.seq
# -bsequence dna-align/BPUM_0268.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00518___yceG-BPUM_0268.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00518___yceG-BPUM_0268.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00518___yceG
# 2: BPUM_0268
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1735
# Identity: 1097/1735 (63.2%)
# Similarity: 1097/1735 (63.2%)
# Gaps: 239/1735 (13.8%)
# Score: 3076.0
#
#
#=======================================
BSNT_00518___ 1 ATGAGACAAGAAGAACTAACCATTCATA---AAGCACTTCCGGCTGATGG 47
.||||..|..|||| ||.||||..|| ||.|| |.|||.|| |
BPUM_0268 1 GTGAGTTATAAAGA---AATCATTGTTAACCAAACA---CGGGCAGA--G 42
BSNT_00518___ 48 C-----GATTGGAAAAGCCTGCTGTTTCAGCCATTGCCGGAGCGGGATCA 92
| |.||||||||.|.|||||....||||..|.||.||..|.|||..
BPUM_0268 43 CAGGAAGCTTGGAAAAACGTGCTGAAAAAGCCGCTCCCTGAAAGAGATGG 92
BSNT_00518___ 93 CTATGAAACTGCACAAGG---------CCTT-TCTTTTTCTCGTCTTGCC 132
.||||.| |||| |.|| ||.||..|.|||||.|||
BPUM_0268 93 TTATGTA-------AAGGATGAGCATACATTGTCCTTGCCGCGTCTCGCC 135
BSNT_00518___ 133 GGTCAGATATTGGGCACGCCTATTGATGAGACGGACTACTATA------- 175
|..|.|.|..|.||.||.||...|||||..||.||.||.|.||
BPUM_0268 136 GCCCGGGTCCTTGGAACTCCGCATGATGCAACCGATTATTTTATTTATTT 185
BSNT_00518___ 176 ACGAGCTGTATGAGCTGTCTGTAAAC-GACCGCATAACGATTTTGAGTGA 224
|| ||||..|.|.|| |||| ||..||||....|||||.|||||
BPUM_0268 186 AC-------ATGAATTATATG-AAACAGATGGCATTCATATTTTAAGTGA 227
BSNT_00518___ 225 AACGCTTGATAAAACAATC--------GAACCGGAAACA-TTTCAAAAGC 265
|||||| ||||| ||.|||| |.|| ||||||..||
BPUM_0268 228 AACGCT--------CAATCGTCATATTGAGCCGG-AGCATTTTCAAGCGC 268
BSNT_00518___ 266 TTCAGCATATTCATTCCATCAATCAGAAAGAAAAAGGGCTGTCAGTCAGC 315
||||.|..|||||||..||.||.||..|||||||.||.|||||.||.|..
BPUM_0268 269 TTCAACGCATTCATTTGATTAACCAAGAAGAAAAGGGACTGTCCGTGAAT 318
BSNT_00518___ 316 CGCTTTGTTGCCTTTTTGGACGGGGAAAAGCTGATTG--CGAAGCACTCA 363
||||||||.||.||.||.||.||.|||.||||||||| || .||..||
BPUM_0268 319 CGCTTTGTGGCTTTCTTAGATGGTGAACAGCTGATTGTACG--CCATCCA 366
BSNT_00518___ 364 AATCCCCTGATGCACCGCCAT------------TTAAGAAAAGCGCTGAT 401
||.||..|||||.||||.||| ||.|..||.|.|.| |
BPUM_0268 367 AACCCAGTGATGAACCGGCATATCCGTCTTTCATTGATCAAGGTGTT--T 414
BSNT_00518___ 402 GACGCTTTTACATACCTTTGCGGACAGTCATGAAAAGGGGCTGA----AT 447
|| ||.||| ||..|...|| |||||| |||.|| |.
BPUM_0268 415 GA-GCATTT-CAAGCAGCTG--------CATGAA----GGCGGATTTCAG 450
BSNT_00518___ 448 CATCCTGATTTTCGCAGAGTGCTGCTTGATGTCTCGAAGTTTTCCTTAAA 497
|||||.|||||.|||.|.||..||||.||||||...|||||.||....||
BPUM_0268 451 CATCCCGATTTCCGCCGTGTTTTGCTGGATGTCGTAAAGTTCTCAAATAA 500
BSNT_00518___ 498 CCATCTGAACCCCTGGCTGGAAAAAACCGATATAGAGCGGGAG-----AT 542
.|||||....||.||||||.|..||..|.||||||| || ||
BPUM_0268 501 TCATCTAGGTCCATGGCTGAAGGAAGTCAATATAGA-----AGAAAAAAT 545
BSNT_00518___ 543 GCCGAAGATTGTTTGGTATGGAGATGCGACGAAAAGCCAGCTCTA-TTTC 591
||||....|..|||||||||||||.||||..|||||.|||||.|| ||||
BPUM_0268 546 GCCGGCTGTCATTTGGTATGGAGAGGCGAATAAAAGTCAGCTTTATTTTC 595
BSNT_00518___ 592 TTATATTATCTGATGCTGGTCGGCTGTGATGTACTACTGTTCCATCC--- 638
|| ||.|||.|.||||||.|.|||||||||||..||||.||.|||||
BPUM_0268 596 TT-TACTATGTCATGCTGATTGGCTGTGATGTTGTACTATTTCATCCAGA 644
BSNT_00518___ 639 -GGCG-GGAATCGATCAGCTGGCGCTTGTCGA-CCCGAAGCAGGAGCTCG 685
|||| |||.|||.||.||...| |.|| ||.|||| |..||||..
BPUM_0268 645 GGGCGAGGATTCGTTCCGCGAAC-----TAGATCCAGAAG-AAAAGCTGA 688
BSNT_00518___ 686 GTTTTACGGAAAAGCTCCCGGATGTTTCTGAGCTTCAGCCGTTTCCGAAA 735
.|||||..||..||...||||....|.|..||||..|.|||||.||.|..
BPUM_0268 689 CTTTTATTGATCAGTATCCGGGGACTACGAAGCTGGAACCGTTCCCTACT 738
BSNT_00518___ 736 GAAAAACCAGACCGGAAATCAACAGTGGCTTACCGCTCAACAAAGGAAAT 785
|||||.||.||..|||||||.||.|||||.||||||||.||||..||..|
BPUM_0268 739 GAAAAGCCTGAGAGGAAATCGACGGTGGCGTACCGCTCGACAAGAGAGCT 788
BSNT_00518___ 786 TGAACATGTGCTGAATCAC-GAGGAATCCATGCTGTATAAGCCGTGGCAG 834
||||.|.|||||..|| || ||.||.||.||||||||||||||||||||.
BPUM_0268 789 TGAAGAGGTGCTCCAT-ACGGAAGATTCAATGCTGTATAAGCCGTGGCAA 837
BSNT_00518___ 835 TTCAGAGATCACACACCGGTGTCCGTTACGCTGAAAACGACCTATGATGA 884
|||||||||||.||.||....||..||||||||||.||.||.||||||||
BPUM_0268 838 TTCAGAGATCATACTCCTCATTCTATTACGCTGAAGACAACGTATGATGA 887
BSNT_00518___ 885 ATTGTTTTTAATCACGAAAGAACGCGCCTTTATTCGGCCGAATTTCAAAG 934
.||||||||.||..|.||.|||||..||||||||||.||.|||||..|||
BPUM_0268 888 GTTGTTTTTGATTGCAAAGGAACGATCCTTTATTCGCCCTAATTTTCAAG 937
BSNT_00518___ 935 CTGA--TAAACATTCCATTGAGATTCCGAATGTATTCGCCAAAATTATGG 982
|.|| ...||| |.||..|||||||.|||.|.||.||.|||||.||||
BPUM_0268 938 CAGACCGCGACA--CGATACAGATTCCAAATCTCTTTGCGAAAATGATGG 985
BSNT_00518___ 983 GCGTGTCGAAAGACAATAAG-GAATATTGGAACAGGCTTCATACTCTAGC 1031
|.||..|...|||||| |.| |||||.|||.|..|..|.||.||..||..
BPUM_0268 986 GAGTCACACGAGACAA-ACGTGAATACTGGGATCGTATCCACACGTTAAT 1034
BSNT_00518___ 1032 GGATTATCAGGAAA---CCGAA----ATGGTCAGAAGC---TTTCCATTT 1071
|||.| ||||| .|||| || || || ||.||.|||
BPUM_0268 1035 GGAAT----GGAAAGAGACGAAGACCAT--TC----GCCATTTCCCTTTT 1074
BSNT_00518___ 1072 ACAGAAGAAATAAAGTCGAACTATCAATTTCACTA-CAGCCACGCACTTG 1120
||..|||||.|.|..|||||.|||||||||||.|| ||| |||||.|||
BPUM_0268 1075 ACGAAAGAAGTGACATCGAATTATCAATTTCATTATCAG-CACGCCCTT- 1122
BSNT_00518___ 1121 ATCA--AGAAGGGAACATTGATCCGGACAAGCTGATGGCAAGCAATGTGT 1168
||| .|..||..|.||||||||.||.....|.|||..|||||||||||
BPUM_0268 1123 -TCATCTGCTGGAGAGATTGATCCTGAATTATTAATGAAAAGCAATGTGT 1171
BSNT_00518___ 1169 GGCAGTACAAACAGCTGCCGGCGGG--CGTTCAGACTGCCATTGCCAAAA 1216
||||.|.....||.||....|.||| || |||..|||.||.||..|..
BPUM_0268 1172 GGCAATTTTCTCATCTATATGAGGGGACG--CAGCGTGCGATAGCAGAGG 1219
BSNT_00518___ 1217 CGATTTCGAGAATGTG-CAGGCACCCGCGGCTTAAAGCTTTGCATCAGGA 1265
|.||.||..||||.|| || |||.||| |||||.|..| |||
BPUM_0268 1220 CAATATCTCGAATCTGTCA-GCATCCG-------AAGCTATTAA--AGG- 1258
BSNT_00518___ 1266 ACAAGTCAA------------GGATGTTCAAATCTATTTGTTTAAACAAA 1303
|||.||| .|||||.|..||.|||||.||.|||||..
BPUM_0268 1259 --AAGGCAATGAGACTGAATTAGATGTCCGTATTTATTTATTCAAACAGG 1306
BSNT_00518___ 1304 CAACAAACCTGCCT-----------GCTAATCTGCTGAAATTGATTCAAA 1342
.| ||||.| |||.|| || ||.|.|||||||
BPUM_0268 1307 TA------CTGCATATTGGTCAGGAGCTCAT----TG-AACTCATTCAAA 1345
BSNT_00518___ 1343 TGTTCGACTATGCGCAAACCGTTCCGAAACTCGTTTTATATCATACGGA- 1391
..||.||.||||||||||||||.||||||.|..||||||||||||||||
BPUM_0268 1346 CTTTTGATTATGCGCAAACCGTACCGAAAGTGATTTTATATCATACGGAA 1395
BSNT_00518___ 1392 ---AATGAGCG-GCGGACTCGCGCGTTCGGATGCTGCCGCCCTGCTGTTC 1437
|||| |.| ||.|||| |||||.|||||.||.|||||..|.||.
BPUM_0268 1396 TATAATG-GTGAGCTGACT----CGTTCTGATGCGGCTGCCCTCATTTTT 1440
BSNT_00518___ 1438 CTGAATGAAATCGGAATCGATATCATCATTTATAATCCGCCCGGACACCA 1487
||.||||||||.||..|.|||.||.||.|.|||.|||||.|.|||.||||
BPUM_0268 1441 CTAAATGAAATGGGTGTGGATCTCTTCGTGTATCATCCGGCGGGATACCA 1490
BSNT_00518___ 1488 AGATATTGAGCAGTTTATTGAAGAGGACCA---GTATGATATCCACTGGC 1534
...|||.||||.||.||| |||.||||| .|.|||||.|||.||||
BPUM_0268 1491 GTGTATCGAGCGGTATAT---AGATGACCAATTATTTGATACCCATTGGC 1537
BSNT_00518___ 1535 TGGATGACATGGTGTTTCAGCAGGACTACAAAGAGCCTTCGCTTGT--GA 1582
|.|||||.|||||..|..|.|||||.|..||||||||.||..|.|| ||
BPUM_0268 1538 TTGATGAGATGGTCATGAACCAGGAGTTTAAAGAGCCGTCCATCGTTAGA 1587
BSNT_00518___ 1583 AAAGGCTCTTCAGAACCATTACCCAAAA---ATAA 1614
|||...| |||| |.|||||| |||| ||||
BPUM_0268 1588 AAATTAT-TTCA-ATCCATTA---AAAACCGATAA 1617
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