Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00531 and BPUM_0275

See Amino acid alignment / Visit BSNT_00531 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:21
# Commandline: needle
#    -asequence dna-align/BSNT_00531___amhX.1.24716.seq
#    -bsequence dna-align/BPUM_0275___amhX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00531___amhX-BPUM_0275___amhX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00531___amhX-BPUM_0275___amhX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00531___amhX
# 2: BPUM_0275___amhX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1210
# Identity:     790/1210 (65.3%)
# Similarity:   790/1210 (65.3%)
# Gaps:         140/1210 (11.6%)
# Score: 2389.5
# 
#
#=======================================

BSNT_00531___      1 ATG-CAAAAGCTTT--CAGAAGACATGAAACAAACCATTATGGACATCTT     47
                     ||| |||   ||||  ||.|.||||||.|.|||||..|.|..||||||||
BPUM_0275___a      1 ATGACAA---CTTTGACAAACGACATGCAGCAAACGGTGAAAGACATCTT     47

BSNT_00531___     48 CGAGCATCTGCACGCGAATCCTGAAGTCAGCTGG-----AAGGAATATGA     92
                     .||.||.||||||||..|.||||||.||||||||     ||.|||||.||
BPUM_0275___a     48 TGAACACCTGCACGCTCACCCTGAAATCAGCTGGGAAGAAACGAATACGA     97

BSNT_00531___     93 -GAC--AACTTCA----TTTTTGAAACAAAAGCTTGAGGATTTAGGGTGC    135
                      |.|  |.|||.|    ||.|||||..|||            ||||.||.
BPUM_0275___a     98 CGGCTTATCTTGAGGACTTATTGAAGAAAA------------TAGGCTGT    135

BSNT_00531___    136 CGGACGCGCACGTTTTCAGACTGCACCGGGGTTGTCGGCGAAATCGGCTC    185
                     |..||.||.||.|||...|||||.||.||.||..||||.|||||.||...
BPUM_0275___a    136 CAAACTCGAACATTTGACGACTGTACAGGAGTGATCGGTGAAATTGGAGA    185

BSNT_00531___    186 AGGCTCACCTGTTGTAGCGGTACGCGCTGATATTGACGCGCTGTGGCAGG    235
                     |||.|||||.||.||.|||||..|.||.||||||||.||.||.|||||||
BPUM_0275___a    186 AGGTTCACCAGTGGTCGCGGTGAGAGCCGATATTGATGCACTTTGGCAGG    235

BSNT_00531___    236 AGGTTAACGGCACATTTCGCGCCAACCATTCCTGCGGACACGATTCACAT    285
                     |.||..|.||....||||..|||||.|||||.||.||.||||||.|||||
BPUM_0275___a    236 AAGTAGATGGTGAGTTTCAAGCCAATCATTCATGTGGTCACGATGCACAT    285

BSNT_00531___    286 ATGACAATGGCATTGGGCACGTTAATGCTGC--TAAAAAAACAACCTGAG    333
                     |||||||||||..|.|||||.||.|||  ||  |||||.||.||   |||
BPUM_0275___a    286 ATGACAATGGCTCTCGGCACCTTCATG--GCATTAAAAGAAAAA---GAG    330

BSNT_00531___    334 CTTCCGAAGGGTACAATCCGTTTTATCTTTCAGCCGGCAGAAGAAAAAGG    383
                     ||.||.||.||.||.|||||.||.||.||||||||.||.||.||||||||
BPUM_0275___a    331 CTCCCAAACGGCACCATCCGGTTCATTTTTCAGCCTGCTGAGGAAAAAGG    380

BSNT_00531___    384 CGGCGGCGCCTTGAAAATGATAGAAGAAGGCGTGCTTGATGATATCGACT    433
                     ||||||.||.|||||||||||.||||||||.|||||.|..||..|.||.|
BPUM_0275___a    381 CGGCGGTGCGTTGAAAATGATTGAAGAAGGTGTGCTAGCAGACGTAGATT    430

BSNT_00531___    434 ATTTGTATGGCGTTCACGTCCGTCCGATCCAGGAAACACAAAACGGCCGC    483
                     |.||.||.||.||.||.||.||.||.||.||.||||||..||||||.|||
BPUM_0275___a    431 ACTTATACGGAGTACATGTGCGCCCAATTCAAGAAACATTAAACGGACGC    480

BSNT_00531___    484 TGCGCTCCGTCTATTCTGCACGGATCAAG---CCAGCACATTGAGGGAAC    530
                     |||||.||..|.|||.||||.|||||.||   .||..||||   .||.||
BPUM_0275___a    481 TGCGCACCTGCAATTTTGCATGGATCGAGTAATCATTACAT---CGGCAC    527

BSNT_00531___    531 GATCATCGGGGAAGAGACTCATGGCGCCCGTCCGCACCTCGGGAAAAACA    580
                     .||.||.||.||.||..||||.||.||.||.|||||.||.||||..|||.
BPUM_0275___a    528 AATTATTGGTGAGGAAGCTCACGGTGCACGCCCGCATCTAGGGATCAACG    577

BSNT_00531___    581 GCATTGAAATTGCGGCATTT---CTTGTACATAAG-CTCGGACTCATTCA    626
                     ..||||||   |.|||.|.|   ||.||.|| ||| ||||..|..||.||
BPUM_0275___a    578 TGATTGAA---GTGGCTTCTACCCTCGTGCA-AAGACTCGCGCATATCCA    623

BSNT_00531___    627 TATTGACCC-------GCAAATCCCGCATACCGTCAAAATGACAAAACTT    669
                     |.|.|||||       |||       |||.|.||.||||||||.||.||.
BPUM_0275___a    624 TGTCGACCCAAGAGTTGCA-------CATTCTGTGAAAATGACCAACCTA    666

BSNT_00531___    670 CAAGCCGGCGGTGAAAGCTCTAACATCATTCCAGGAAAAGCATCGTTCAG    719
                     ||.||.|||||.|..||.||.||||||||.||.||.|||||.||.||.| 
BPUM_0275___a    667 CATGCTGGCGGAGGCAGTTCAAACATCATCCCTGGCAAAGCTTCTTTTA-    715

BSNT_00531___    720 CCTT-GATTTGCGCGCACAGACCAATGAAGCCATGGAGGCGTTAATCGCC    768
                     |.|| |||.|..|.|||||.||.|||||||..|||||    |.||    |
BPUM_0275___a    716 CATTAGATGTCAGAGCACAAACAAATGAAGTGATGGA----TGAA----C    757

BSNT_00531___    769 GAGACA--------GAAAGAGCC------TGTGAAGCGGCCGCCGCTGCA    804
                     .|||.|        |||||||||      |.||.|      ||.|.|||.
BPUM_0275___a    758 TAGAAAAAGAAATTGAAAGAGCCGTACATTCTGTA------GCAGATGCC    801

BSNT_00531___    805 TTCGGCGCAAAAATCGATCTGCA-----AAAAGAACACAGCCTTCCTGCG    849
                     ||.|||||    .||.|| |.||     ||.|||.||..|.||.|||||.
BPUM_0275___a    802 TTTGGCGC----TTCCAT-TTCACTTTCAACAGATCATCGTCTACCTGCC    846

BSNT_00531___    850 GCAACACAAAACAAAGAAGCTGAAGCGATCATGGCAGAAGCCATT--ACA    897
                     |||||....||..|.|||||.|....|||.|||.|..||||||||  |.|
BPUM_0275___a    847 GCAACTTTGAATGAGGAAGCCGTCCAGATGATGTCTCAAGCCATTGAAAA    896

BSNT_00531___    898 GATATCATCGGGGC--TGAGCGGCTTGATGACCCGCTTGTCACTACCGGC    945
                     |.|.|.|    |||  .||||.|||.|||...|||||.||.||.||.||.
BPUM_0275___a    897 GGTTTTA----GGCAAGGAGCAGCTCGATCCGCCGCTCGTAACGACAGGT    942

BSNT_00531___    946 GGAGAGGATTTCCATTTTTACGCCGTGAAGGTGCCGAATCTGAAAACAAC    995
                     |||||||||||.||.|||||.||.|..|||.|.|||.||.|.|||.|.||
BPUM_0275___a    943 GGAGAGGATTTTCACTTTTATGCTGCAAAGCTTCCGCATATCAAATCCAC    992

BSNT_00531___    996 GATGCTCGGACTAGGCTGCGGGCTCCAGCCGGGACTCCATCATCCGCACA   1045
                     ||||||.||..|||||||.|..||..||||.||.||.||||||||..|.|
BPUM_0275___a    993 GATGCTTGGTTTAGGCTGTGATCTAGAGCCTGGTCTACATCATCCATATA   1042

BSNT_00531___   1046 TGACATTTGACAGAAATGCGATGTTCAACGGCATTCACATTTT-AGCGAA   1094
                     |||||||.|||.|...|||.||.||.|..||||||.|.||||| |..|||
BPUM_0275___a   1043 TGACATTCGACCGTTCTGCTATTTTTACTGGCATTGAGATTTTGACTGAA   1092

BSNT_00531___   1095 TGCCGTATTA-AAAACTTTTCAAAAGGCTG-ATTCACCCGCTGCCGCTTA   1142
                      ||.|| ||| .||||..||||    ||.| |||||.|            
BPUM_0275___a   1093 -GCTGT-TTATCAAACCCTTCA----GCAGCATTCATC------------   1124

BSNT_00531___   1143 CGTAAAATAA   1152
                           ||||
BPUM_0275___a   1125 ------ATAA   1128


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