Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01794 and BPUM_0279

See Amino acid alignment / Visit BSNT_01794 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:17
# Commandline: needle
#    -asequence dna-align/BSNT_01794___yhjM.1.24716.seq
#    -bsequence dna-align/BPUM_0279___yhjM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01794___yhjM-BPUM_0279___yhjM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01794___yhjM-BPUM_0279___yhjM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01794___yhjM
# 2: BPUM_0279___yhjM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1067
# Identity:     656/1067 (61.5%)
# Similarity:   656/1067 (61.5%)
# Gaps:         154/1067 (14.4%)
# Score: 1861.5
# 
#
#=======================================

BSNT_01794___      1 ATGCCTACAATTGATGAAATAGCAAAATTATGCAATGTGTCTAAAACCAC     50
                     |||..|||||||.|||||||.||.|||...|||...||.||.|..|||||
BPUM_0279___y      1 ATGTGTACAATTTATGAAATTGCCAAACGCTGCGGGGTTTCAACGACCAC     50

BSNT_01794___     51 AGTGTCAAGAGTATTGAATAATCATCCGTATGTGTCGAAAGAAAAAAGAG    100
                     .||.||.|||||..|||||.|||||||.||||||||..|.|||||..|..
BPUM_0279___y     51 CGTTTCCAGAGTGCTGAATCATCATCCTTATGTGTCAGAGGAAAAGCGCC    100

BSNT_01794___    101 ATATGATCTTAAAGGCAATTAACGAACTTGACTACACTCCCAATTATTTA    150
                     |..|.||.|||.|||..||.||.|||.|.||.||.||.||.|.||....|
BPUM_0279___y    101 AGCTCATATTACAGGTGATGAAGGAAATGGAATATACACCGAGTTCAGCA    150

BSNT_01794___    151 GCTCGGAATTTTAGGAGAAATAAGACACAAACGATAGCTTTATCGGTTCC    200
                     |||||.|.|.|..|...|.||.|||||.||||.||.|||.|.||.| |||
BPUM_0279___y    151 GCTCGCACTCTACGTTCACATCAGACAAAAACCATTGCTGTGTCTG-TCC    199

BSNT_01794___    201 GAG-TATCGACCATCCATTTTTTGCTCAATTAATAAAAGGGGTCTCTCAT    249
                     .|| |.|.||||||||.||||||||.||||||||.|||||..||||..|.
BPUM_0279___y    200 CAGCTGTGGACCATCCTTTTTTTGCACAATTAATTAAAGGCATCTCAAAA    249

BSNT_01794___    250 GAAGCACTGTTTAAGAATTACAAGG---TA-----ATTGTATTTCAGACC    291
                     ||||||.||     ||   .|||||   ||     ||.||..|||||||.
BPUM_0279___y    250 GAAGCATTG-----GA---CCAAGGCTATAAAGCCATCGTGCTTCAGACG    291

BSNT_01794___    292 TTTTATGACAAACAGACAGAGCTAGAATTATTAGAG--------------    327
                     ||||||          |||     ||||..||||||              
BPUM_0279___y    292 TTTTAT----------CAG-----GAATCTTTAGAGCTTGAAGGGCTTCA    326

BSNT_01794___    328 -TTATTGAAACATAA-AGAAGTGGATGGTATTATTCTTGGAACTTTAGAA    375
                      ||||| |||.|.|| ||||||.|||||..|.|||.|.||..|.||||||
BPUM_0279___y    327 ATTATT-AAAAAGAAGAGAAGTAGATGGAGTCATTTTAGGGGCATTAGAA    375

BSNT_01794___    376 AATGAATGGGATCAGATATCCCCTTTCTTAAAGTATGGTCCTATCTTATT    425
                     |||..||||||..||||....||.||.||||.|.|.||.||||  ||.|.
BPUM_0279___y    376 AATCCATGGGAAAAGATTGAGCCATTTTTAACGAACGGCCCTA--TTGTC    423

BSNT_01794___    426 ATG--TAATGAATATCATCACTCAGCGGACATCACGATAATTGGGTATGA    473
                     |||  .||||||||||||||..||||.|||||..||||.|||||.||.||
BPUM_0279___y    424 ATGGCGAATGAATATCATCAAACAGCAGACATTCCGATTATTGGATACGA    473

BSNT_01794___    474 TGAATTTGAAGCTACATACATGGGGGT--AGTACATTTAATTGAAAGAGG    521
                     |||...|||||||.|.||.|..|..||  |.|||  ||.|||.|....||
BPUM_0279___y    474 TGAGCGTGAAGCTGCCTATAAAGCAGTTGACTAC--TTGATTCAGTCGGG    521

BSNT_01794___    522 GCATAAAAAAATTGGGTTTTGTTTTGATACTCCATATAGC---GAAGCTC    568
                     ||.||||...||.||||||||.|||||||   ||.|.|||   |||||.|
BPUM_0279___y    522 GCGTAAATCGATCGGGTTTTGCTTTGATA---CAGAAAGCAGTGAAGCGC    568

BSNT_01794___    569 AATGTCAGAGGAAAGAGGGTTATTTGAAAGCTTT------ACAAGATTAC    612
                     |....||.||||||.||||.|||.|..|.|||.|      .||.|     
BPUM_0279___y    569 AGAAACAAAGGAAACAGGGCTATCTAGACGCTCTTTCTGCCCATG-----    613

BSNT_01794___    613 GATT-----TACATCATAGAAGCGAATGGATATTCGGCGAAATGTTTAAT    657
                     |.||     |.|||.|      |||.|||.|.|||||.||....||.|..
BPUM_0279___y    614 GCTTGCCGCTGCATGA------CGATTGGTTGTTCGGTGAGGCCTTCACC    657

BSNT_01794___    658 ATCGAGGATGGCTTTCGTGTTTTTCATAAGATAAAGGATCTAA---AGGA    704
                     ||.||.|||||||||||        ||    |||.||||.|.|   |.||
BPUM_0279___y    658 ATTGAAGATGGCTTTCG--------AT----TAATGGATATCATCCACGA    695

BSNT_01794___    705 CA--------GACCCTCA-GCAATATTTACAGGAAATGATCAAGTCGCCG    745
                     ||        |..|||.| ||.||.||.||.||.||||||||||||||.|
BPUM_0279___y    696 CATGAAAAATGCACCTGATGCTATTTTCACCGGTAATGATCAAGTCGCTG    745

BSNT_01794___    746 CAGGGATTATTAAACAGGCGATGAAAAATGGCTTTAAAGTTCCAGAAGAC    795
                     |.||..|.||||||||.||.||...|.||||.|.|.|..||||..|.||.
BPUM_0279___y    746 CTGGACTCATTAAACAAGCCATTTCATATGGTTATCACATTCCTAAGGAT    795

BSNT_01794___    796 TTAGCTGTAATTGGTTTTGACAACCAATTGATCTGCCAAGTCGTTA----    841
                     .||||.||.||.||.|.||||||.|||...||.|||.|    |.||    
BPUM_0279___y    796 CTAGCGGTGATCGGCTATGACAATCAAGACATTTGCGA----GGTAACAG    841

BSNT_01794___    842 CTCCGACCATAACAACAATTGATATCCCCGTAATAGAATTAGGTCAACAG    891
                     ||||.||.||.||.||||||||.|||||..|..||||..||||.||.|.|
BPUM_0279___y    842 CTCCAACGATCACCACAATTGACATCCCGATCGTAGAGCTAGGCCAGCGG    891

BSNT_01794___    892 GCTGTGTTGAAAATCATCGAG-TCCATTTCGGGTAATGCCA---------    931
                     .|||||..|.||||.|||||| |||           |||.|         
BPUM_0279___y    892 TCTGTGCAGCAAATGATCGAGCTCC-----------TGCTAGACCAAAAA    930

BSNT_01794___    932 -CTTTA-------AACAGAAGAATTATTAAACTGCCAACAAAGCTTATTA    973
                      |.|||       ||||       |||..|.||.||.||...|||..|.|
BPUM_0279___y    931 CCATTACAGCGTGAACA-------TATCCAGCTACCTACCCGGCTCGTGA    973

BSNT_01794___    974 TAAGAGAATCAACGTAA    990
                     .|||.|||||.||.|||
BPUM_0279___y    974 CAAGGGAATCGACATAA    990


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